Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015423-T1 | PROTEIN PATCHED |
OS493_015424-T1 | PROTEIN PATCHED |
OS493_015425-T1 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
OS493_015426-T1 | PROTEIN PATCHED |
OS493_015427-T1 | PROTEIN PATCHED |
OS493_015428-T1 | PROTEIN PATCHED |
OS493_015429-T1 | DNA-DIRECTED RNA POLYMERASE SUBUNIT K |
OS493_015430-T1 | RNA 3' TERMINAL PHOSPHATE CYCLASE |
OS493_015431-T1 | PROTEIN PET117 HOMOLOG, MITOCHONDRIAL |
OS493_015432-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
OS493_015433-T1 | |
OS493_015436-T1 | |
OS493_015439-T1 | OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870) |
OS493_015440-T1 | PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED |
OS493_015441-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
OS493_015442-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 152 |
OS493_015443-T1 | BONUS, ISOFORM C-RELATED |
OS493_015444-T1 | |
OS493_015445-T1 | |
OS493_015446-T1 | |
OS493_015447-T1 | |
OS493_015448-T1 | RADIAL SPOKE HEAD 1 HOMOLOG |
OS493_015449-T1 | |
OS493_015450-T1 | JUN TRANSCRIPTION FACTOR-RELATED |
OS493_015451-T1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
OS493_015452-T1 | MIP08469P |
OS493_015453-T1 | TRANSMEMBRANE PROTEIN 69 |
OS493_015454-T1 | GABA-B RECEPTOR |
OS493_015455-T1 | GABA-B RECEPTOR |
OS493_015457-T1 | |
OS493_015458-T1 | |
OS493_015459-T1 | |
OS493_015460-T1 | GABA-B RECEPTOR |
OS493_015461-T1 | GABA-B RECEPTOR |
OS493_015462-T1 | |
OS493_015463-T1 | |
OS493_015464-T1 | FORMATE ACETYLTRANSFERASE 3-RELATED |
OS493_015465-T1 | FORMATE ACETYLTRANSFERASE 3-RELATED |
OS493_015466-T1 | DEFERROCHELATASE/PEROXIDASE |
OS493_015467-T1 | |
OS493_015468-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_015469-T1 | |
OS493_015470-T1 | METHYLTRANSFERASE |
OS493_015471-T1 | METHYLTRANSFERASE |
OS493_015472-T1 | METHYLTRANSFERASE |
OS493_015473-T1 | CYSTEINE PROTEASE ATG4 |
OS493_015474-T1 | CYSTEINE PROTEASE ATG4 |
OS493_015475-T1 | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN |
OS493_015476-T1 | ATP-DEPENDENT RNA HELICASE DBP3 |
OS493_015477-T1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |