About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015423-T1PROTEIN PATCHED
OS493_015424-T1PROTEIN PATCHED
OS493_015425-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_015426-T1PROTEIN PATCHED
OS493_015427-T1PROTEIN PATCHED
OS493_015428-T1PROTEIN PATCHED
OS493_015429-T1DNA-DIRECTED RNA POLYMERASE SUBUNIT K
OS493_015430-T1RNA 3' TERMINAL PHOSPHATE CYCLASE
OS493_015431-T1PROTEIN PET117 HOMOLOG, MITOCHONDRIAL
OS493_015432-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_015433-T1
OS493_015436-T1
OS493_015439-T1OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870)
OS493_015440-T1PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED
OS493_015441-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
OS493_015442-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 152
OS493_015443-T1BONUS, ISOFORM C-RELATED
OS493_015444-T1
OS493_015445-T1
OS493_015446-T1
OS493_015447-T1
OS493_015448-T1RADIAL SPOKE HEAD 1 HOMOLOG
OS493_015449-T1
OS493_015450-T1JUN TRANSCRIPTION FACTOR-RELATED
OS493_015451-T1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
OS493_015452-T1MIP08469P
OS493_015453-T1TRANSMEMBRANE PROTEIN 69
OS493_015454-T1GABA-B RECEPTOR
OS493_015455-T1GABA-B RECEPTOR
OS493_015457-T1
OS493_015458-T1
OS493_015459-T1
OS493_015460-T1GABA-B RECEPTOR
OS493_015461-T1GABA-B RECEPTOR
OS493_015462-T1
OS493_015463-T1
OS493_015464-T1FORMATE ACETYLTRANSFERASE 3-RELATED
OS493_015465-T1FORMATE ACETYLTRANSFERASE 3-RELATED
OS493_015466-T1DEFERROCHELATASE/PEROXIDASE
OS493_015467-T1
OS493_015468-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_015469-T1
OS493_015470-T1METHYLTRANSFERASE
OS493_015471-T1METHYLTRANSFERASE
OS493_015472-T1METHYLTRANSFERASE
OS493_015473-T1CYSTEINE PROTEASE ATG4
OS493_015474-T1CYSTEINE PROTEASE ATG4
OS493_015475-T1ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN
OS493_015476-T1ATP-DEPENDENT RNA HELICASE DBP3
OS493_015477-T1IRON-SULFUR CLUSTER ASSEMBLY PROTEIN
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