Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015132-T1 | |
OS493_015133-T1 | |
OS493_015134-T1 | |
OS493_015135-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_015136-T1 | POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN |
OS493_015137-T1 | |
OS493_015138-T1 | XAA-PRO AMINOPEPTIDASE 1 |
OS493_015139-T1 | |
OS493_015141-T1 | |
OS493_015142-T1 | NUCLEOPLASMIN |
OS493_015143-T1 | XAA-PRO AMINOPEPTIDASE 1 |
OS493_015144-T1 | XAA-PRO AMINOPEPTIDASE 1 |
OS493_015145-T1 | |
OS493_015146-T1 | |
OS493_015147-T1 | NUCLEOPLASMIN |
OS493_015148-T1 | |
OS493_015151-T1 | AGAP008170-PA |
OS493_015153-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_015154-T1 | |
OS493_015155-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_015156-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_015158-T1 | |
OS493_015159-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_015160-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_015161-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_015162-T1 | METAL TRANSPORTER CNNM |
OS493_015164-T1 | ALPHA CATENIN |
OS493_015165-T1 | ALPHA CATENIN |
OS493_015166-T1 | VESICULAR MANNOSE-BINDING LECTIN |
OS493_015167-T1 | STEP II SPLICING FACTOR SLU7 |
OS493_015168-T1 | |
OS493_015169-T1 | |
OS493_015170-T1 | TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B |
OS493_015171-T1 | TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B |
OS493_015172-T1 | SERINE/THREONINE-PROTEIN KINASE PIM |
OS493_015173-T1 | |
OS493_015174-T1 | ATP-DEPENDENT RNA AND DNA HELICASE |
OS493_015175-T1 | WD-40 REPEAT PROTEIN |
OS493_015176-T1 | LIM DOMAIN-BINDING PROTEIN |
OS493_015177-T1 | |
OS493_015178-T1 | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED |
OS493_015179-T1 | |
OS493_015180-T1 | |
OS493_015181-T1 | RAB GDP/GTP EXCHANGE FACTOR |
OS493_015182-T1 | |
OS493_015183-T1 | |
OS493_015184-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_015186-T1 | |
OS493_015187-T1 | |
OS493_015188-T1 |