About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_005986-T1UNCHARACTERIZED
OS493_005987-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
OS493_005988-T1TRANSCRIPTION FACTOR-LIKE 5 PROTEIN
OS493_005989-T1UNCHARACTERIZED
OS493_005990-T1DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN
OS493_005991-T1-
OS493_005992-T1KINESIN-ASSOCIATED PROTEINS
OS493_005993-T1CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7
OS493_005994-T1PNAS-3 RELATED
OS493_005995-T1PR DOMAIN ZINC FINGER PROTEIN
OS493_005996-T1YEATS DOMAIN
OS493_005997-T1SERINE/THREONINE-PROTEIN KINASE KIST
OS493_005998-T1-
OS493_005999-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_006000-T1GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1
OS493_006001-T1-
OS493_006003-T1PAIRED MESODERM HOMEOBOX PROTEIN 1-RELATED
OS493_006004-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_006005-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_006006-T1LEUCOKININ RECEPTOR-RELATED
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