About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015132-T1
OS493_015133-T1
OS493_015134-T1
OS493_015135-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_015136-T1POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN
OS493_015137-T1
OS493_015138-T1XAA-PRO AMINOPEPTIDASE 1
OS493_015139-T1
OS493_015141-T1
OS493_015142-T1NUCLEOPLASMIN
OS493_015143-T1XAA-PRO AMINOPEPTIDASE 1
OS493_015144-T1XAA-PRO AMINOPEPTIDASE 1
OS493_015145-T1
OS493_015146-T1
OS493_015147-T1NUCLEOPLASMIN
OS493_015148-T1
OS493_015151-T1AGAP008170-PA
OS493_015153-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_015154-T1
OS493_015155-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_015156-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_015158-T1
OS493_015159-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_015160-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_015161-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_015162-T1METAL TRANSPORTER CNNM
OS493_015164-T1ALPHA CATENIN
OS493_015165-T1ALPHA CATENIN
OS493_015166-T1VESICULAR MANNOSE-BINDING LECTIN
OS493_015167-T1STEP II SPLICING FACTOR SLU7
OS493_015168-T1
OS493_015169-T1
OS493_015170-T1TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B
OS493_015171-T1TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B
OS493_015172-T1SERINE/THREONINE-PROTEIN KINASE PIM
OS493_015173-T1
OS493_015174-T1ATP-DEPENDENT RNA AND DNA HELICASE
OS493_015175-T1WD-40 REPEAT PROTEIN
OS493_015176-T1LIM DOMAIN-BINDING PROTEIN
OS493_015177-T1
OS493_015178-T1SERINE/THREONINE-PROTEIN KINASE IAL-RELATED
OS493_015179-T1
OS493_015180-T1
OS493_015181-T1RAB GDP/GTP EXCHANGE FACTOR
OS493_015182-T1
OS493_015183-T1
OS493_015184-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_015186-T1
OS493_015187-T1
OS493_015188-T1
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