Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_014852-T1 | |
OS493_014853-T1 | ARABINOSE-BINDING PROTEIN-RELATED |
OS493_014854-T1 | SEMINAL PLASMA PROTEIN |
OS493_014855-T1 | SEMINAL PLASMA PROTEIN |
OS493_014856-T1 | SEMINAL PLASMA PROTEIN |
OS493_014857-T1 | SEMINAL PLASMA PROTEIN |
OS493_014858-T1 | |
OS493_014859-T1 | FTP DOMAIN-CONTAINING PROTEIN |
OS493_014860-T1 | |
OS493_014861-T1 | |
OS493_014862-T1 | OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED |
OS493_014863-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B |
OS493_014864-T1 | |
OS493_014865-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B |
OS493_014866-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B |
OS493_014867-T1 | NITRILASE-RELATED |
OS493_014868-T1 | NITRILASE-RELATED |
OS493_014869-T1 | |
OS493_014870-T1 | CENTROSOME-ASSOCIATED PROTEIN 350 |
OS493_014871-T1 | CENTROSOME-ASSOCIATED PROTEIN 350 |
OS493_014872-T1 | LD33695P |
OS493_014873-T1 | LD33695P |
OS493_014874-T1 | TRANSMEMBRANE PROTEIN 237 |
OS493_014875-T1 | PROKARYOTIC DNA TOPOISOMERASE |
OS493_014876-T1 | PROKARYOTIC DNA TOPOISOMERASE |
OS493_014877-T1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
OS493_014878-T1 | |
OS493_014879-T1 | |
OS493_014880-T1 | |
OS493_014881-T1 | |
OS493_014882-T1 | |
OS493_014883-T1 | MAKORIN-RELATED |
OS493_014884-T1 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 |
OS493_014885-T1 | |
OS493_014886-T1 | SURFEIT LOCUS PROTEIN |
OS493_014887-T1 | PREFOLDIN SUBUNIT 6 |
OS493_014888-T1 | T-BOX PROTEIN-RELATED |
OS493_014889-T1 | 1700018F24RIK PROTEIN-RELATED-RELATED |
OS493_014890-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
OS493_014891-T1 | |
OS493_014892-T1 | |
OS493_014893-T1 | MCG48959-RELATED |
OS493_014894-T1 | MCG48959-RELATED |
OS493_014895-T1 | COLLAGEN ALPHA |
OS493_014896-T1 | EG:EG0003.4 PROTEIN-RELATED |
OS493_014897-T1 | EG:EG0003.4 PROTEIN-RELATED |
OS493_014898-T1 | EG:EG0003.4 PROTEIN-RELATED |
OS493_014899-T1 | |
OS493_014900-T1 | PROPERDIN |
OS493_014901-T1 | MACROGLOBULIN / COMPLEMENT |