About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014742-T1HIGH-AFFINITY CHOLINE TRANSPORTER 1
OS493_014743-T1HIGH-AFFINITY CHOLINE TRANSPORTER 1
OS493_014744-T1HIGH-AFFINITY CHOLINE TRANSPORTER 1
OS493_014745-T1HIGH-AFFINITY CHOLINE TRANSPORTER 1
OS493_014746-T1
OS493_014747-T1TUDOR DOMAIN CONTAINING PROTEIN
OS493_014748-T1
OS493_014749-T1U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD
OS493_014751-T1
OS493_014752-T1ANAPHASE-PROMOTING COMPLEX SUBUNIT 2
OS493_014753-T1SYNAPTONEMAL COMPLEX CENTRAL ELEMENT PROTEIN 2
OS493_014754-T1SI:CH211-266K2.1
OS493_014755-T1
OS493_014756-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
OS493_014757-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
OS493_014758-T1WD40 REPEAT PROTEIN
OS493_014759-T1WD40 REPEAT PROTEIN
OS493_014760-T1
OS493_014763-T1HOMEOBOX PROTEIN ARISTALESS
OS493_014764-T1BREAST CANCER ANTI-ESTROGEN RESISTANCE PROTEIN 3 HOMOLOG-LIKE PROTEIN
OS493_014765-T1
OS493_014766-T1FCH AND DOUBLE SH3 DOMAINS PROTEIN
OS493_014767-T1
OS493_014768-T1
OS493_014769-T1
OS493_014770-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_014771-T1CYTOSINE-SPECIFIC METHYLTRANSFERASE
OS493_014772-T1CYTOSINE-SPECIFIC METHYLTRANSFERASE
OS493_014773-T1CYTOSINE-SPECIFIC METHYLTRANSFERASE
OS493_014774-T1
OS493_014775-T1CHROMOSOME 1 OPEN READING FRAME 112
OS493_014776-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_014777-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_014778-T1
OS493_014779-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_014780-T1POLYCYSTIN FAMILY MEMBER
OS493_014781-T1POLYCYSTIN-1
OS493_014782-T1
OS493_014783-T1ANTIGEN BSP, PUTATIVE-RELATED
OS493_014784-T1POLYCYSTIN-1
OS493_014785-T1POLYCYSTIN FAMILY MEMBER
OS493_014786-T1POLYCYSTIN FAMILY MEMBER
OS493_014787-T1
OS493_014788-T1POLYCYSTIN-1
OS493_014789-T1PROTEIN SIDEKICK
OS493_014790-T1
OS493_014791-T1
OS493_014792-T1UNCHARACTERIZED
OS493_014793-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_014794-T1OVOCHYMASE-RELATED
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