Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_014795-T1 | |
OS493_014800-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_014801-T1 | |
OS493_014802-T1 | ZINC FINGER PROTEIN |
OS493_014803-T1 | LIM/HOMEOBOX PROTEIN LHX |
OS493_014804-T1 | LIM/HOMEOBOX PROTEIN LHX |
OS493_014805-T1 | |
OS493_014806-T1 | BINDING OXIDOREDUCTASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G17690)-RELATED |
OS493_014807-T1 | |
OS493_014808-T1 | BINDING OXIDOREDUCTASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G17690)-RELATED |
OS493_014809-T1 | BINDING OXIDOREDUCTASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G17690)-RELATED |
OS493_014810-T1 | 39S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL |
OS493_014811-T1 | LIM/HOMEOBOX PROTEIN LHX |
OS493_014812-T1 | FI19480P1 |
OS493_014813-T1 | CADHERIN-23 |
OS493_014814-T1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
OS493_014815-T1 | CAT EYE SYNDROME CRITICAL REGION PROTEIN 6 |
OS493_014816-T1 | LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED |
OS493_014817-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
OS493_014818-T1 | DYNEIN ASSEMBLY FACTOR 5, AXONEMAL |
OS493_014819-T1 | KELCH DOMAIN-CONTAINING PROTEIN 10 |
OS493_014820-T1 | FK506-BINDING PROTEIN 15 |
OS493_014821-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_014823-T1 | CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) |
OS493_014824-T1 | |
OS493_014825-T1 | |
OS493_014826-T1 | RGPR-RELATED |
OS493_014827-T1 | |
OS493_014828-T1 | |
OS493_014829-T1 | |
OS493_014830-T1 | TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 3 |
OS493_014831-T1 | CELL DIVISION PROTEIN KINASE |
OS493_014832-T1 | 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE |
OS493_014834-T1 | BCL2 INTERACTING MEDIATOR OF CELL DEATH |
OS493_014835-T1 | |
OS493_014836-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_014837-T1 | ZINC FINGER, ZZ DOMAIN CONTAINING 3 |
OS493_014838-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_014839-T1 | ADP-RIBOSYL CYCLASE |
OS493_014840-T1 | PROPERDIN |
OS493_014841-T1 | TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1 |
OS493_014842-T1 | |
OS493_014843-T1 | |
OS493_014844-T1 | |
OS493_014845-T1 | |
OS493_014847-T1 | |
OS493_014848-T1 | |
OS493_014849-T1 | |
OS493_014850-T1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
OS493_014851-T1 |