About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014532-T1METHYLTRANSFERASE N6AMT1
OS493_014533-T1
OS493_014534-T1
OS493_014535-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
OS493_014536-T1
OS493_014537-T1
OS493_014538-T1
OS493_014539-T1PROGRAMMED CELL DEATH PROTEIN 2-LIKE
OS493_014540-T1PROGRAMMED CELL DEATH PROTEIN 2-LIKE
OS493_014541-T1
OS493_014542-T1G PROTEIN-COUPLED RECEPTOR
OS493_014543-T1PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE
OS493_014544-T1TRANSPORTER
OS493_014545-T1TRANSPORTER
OS493_014546-T1OPSIN
OS493_014547-T1LD33804P
OS493_014548-T1
OS493_014549-T1
OS493_014550-T1ASAP FAMILY MEMBER
OS493_014551-T1SER/THR PROTEIN KINASE-TRB
OS493_014552-T1POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4
OS493_014553-T1
OS493_014554-T1ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN
OS493_014555-T1-
OS493_014556-T1GASTROKINE 1
OS493_014557-T1
OS493_014558-T1
OS493_014559-T1
OS493_014560-T1
OS493_014561-T1
OS493_014562-T1
OS493_014563-T1
OS493_014564-T1
OS493_014566-T1
OS493_014567-T1
OS493_014568-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
OS493_014569-T1JUN TRANSCRIPTION FACTOR-RELATED
OS493_014570-T1TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9
OS493_014571-T1ANDROGEN-INDUCED PROTEIN 1-RELATED
OS493_014572-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_014573-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_014574-T1
OS493_014575-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_014576-T1
OS493_014577-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_014578-T1
OS493_014579-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_014580-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_014581-T1C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
OS493_014582-T1ADHESION G-PROTEIN COUPLED RECEPTOR
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