Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_014532-T1 | METHYLTRANSFERASE N6AMT1 |
OS493_014533-T1 | |
OS493_014534-T1 | |
OS493_014535-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
OS493_014536-T1 | |
OS493_014537-T1 | |
OS493_014538-T1 | |
OS493_014539-T1 | PROGRAMMED CELL DEATH PROTEIN 2-LIKE |
OS493_014540-T1 | PROGRAMMED CELL DEATH PROTEIN 2-LIKE |
OS493_014541-T1 | |
OS493_014542-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_014543-T1 | PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE |
OS493_014544-T1 | TRANSPORTER |
OS493_014545-T1 | TRANSPORTER |
OS493_014546-T1 | OPSIN |
OS493_014547-T1 | LD33804P |
OS493_014548-T1 | |
OS493_014549-T1 | |
OS493_014550-T1 | ASAP FAMILY MEMBER |
OS493_014551-T1 | SER/THR PROTEIN KINASE-TRB |
OS493_014552-T1 | POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4 |
OS493_014553-T1 | |
OS493_014554-T1 | ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN |
OS493_014555-T1 | - |
OS493_014556-T1 | GASTROKINE 1 |
OS493_014557-T1 | |
OS493_014558-T1 | |
OS493_014559-T1 | |
OS493_014560-T1 | |
OS493_014561-T1 | |
OS493_014562-T1 | |
OS493_014563-T1 | |
OS493_014564-T1 | |
OS493_014566-T1 | |
OS493_014567-T1 | |
OS493_014568-T1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
OS493_014569-T1 | JUN TRANSCRIPTION FACTOR-RELATED |
OS493_014570-T1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 |
OS493_014571-T1 | ANDROGEN-INDUCED PROTEIN 1-RELATED |
OS493_014572-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_014573-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_014574-T1 | |
OS493_014575-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_014576-T1 | |
OS493_014577-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_014578-T1 | |
OS493_014579-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_014580-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_014581-T1 | C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180 |
OS493_014582-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |