Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_014222-T1 | MALONATE-SEMIALDEHYDE DEHYDROGENASE |
OS493_014223-T1 | LIN52 FAMILY MEMBER |
OS493_014224-T1 | SHIPPO-1-RELATED |
OS493_014225-T1 | PIRNA BIOGENESIS PROTEIN EXD1 |
OS493_014226-T1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
OS493_014227-T1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
OS493_014228-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_014229-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_014230-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_014231-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_014232-T1 | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN |
OS493_014233-T1 | MIRROR-IMAGE POLYDACTYLY GENE 1 PROTEIN |
OS493_014234-T1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G03140)-RELATED |
OS493_014235-T1 | ALPHA-GLUCOSIDASE |
OS493_014237-T1 | |
OS493_014238-T1 | |
OS493_014239-T1 | |
OS493_014240-T1 | ALPHA-GLUCOSIDASE |
OS493_014241-T1 | |
OS493_014242-T1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
OS493_014243-T1 | |
OS493_014244-T1 | - |
OS493_014245-T1 | OXIDOREDUCTASES |
OS493_014246-T1 | |
OS493_014247-T1 | |
OS493_014248-T1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
OS493_014249-T1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
OS493_014250-T1 | |
OS493_014251-T1 | PROTEIN CBG20567 |
OS493_014252-T1 | LUPUS LA PROTEIN-RELATED |
OS493_014253-T1 | DRAB11-RELATED |
OS493_014254-T1 | DRAB11-RELATED |
OS493_014255-T1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
OS493_014256-T1 | 30S RIBOSOMAL PROTEIN S14 |
OS493_014257-T1 | |
OS493_014258-T1 | |
OS493_014259-T1 | |
OS493_014260-T1 | RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1 |
OS493_014261-T1 | |
OS493_014262-T1 | RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1 |
OS493_014263-T1 | |
OS493_014264-T1 | SERINE HYDROLASE RBBP9 |
OS493_014265-T1 | |
OS493_014266-T1 | |
OS493_014267-T1 | NUCLEIC ACID-BINDING PROTEINS SUPERFAMILY |
OS493_014268-T1 | SERINE HYDROLASE RBBP9 |
OS493_014269-T1 | |
OS493_014270-T1 | RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1 |
OS493_014271-T1 | RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1 |
OS493_014272-T1 | RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1 |