About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014222-T1MALONATE-SEMIALDEHYDE DEHYDROGENASE
OS493_014223-T1LIN52 FAMILY MEMBER
OS493_014224-T1SHIPPO-1-RELATED
OS493_014225-T1PIRNA BIOGENESIS PROTEIN EXD1
OS493_014226-T1EQUILIBRATIVE NUCLEOSIDE TRANSPORTER
OS493_014227-T1EQUILIBRATIVE NUCLEOSIDE TRANSPORTER
OS493_014228-T1ATP-DEPENDENT RNA HELICASE
OS493_014229-T1ATP-DEPENDENT RNA HELICASE
OS493_014230-T1ATP-DEPENDENT RNA HELICASE
OS493_014231-T1ATP-DEPENDENT RNA HELICASE
OS493_014232-T1RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
OS493_014233-T1MIRROR-IMAGE POLYDACTYLY GENE 1 PROTEIN
OS493_014234-T1HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G03140)-RELATED
OS493_014235-T1ALPHA-GLUCOSIDASE
OS493_014237-T1
OS493_014238-T1
OS493_014239-T1
OS493_014240-T1ALPHA-GLUCOSIDASE
OS493_014241-T1
OS493_014242-T1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
OS493_014243-T1
OS493_014244-T1-
OS493_014245-T1OXIDOREDUCTASES
OS493_014246-T1
OS493_014247-T1
OS493_014248-T1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
OS493_014249-T1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
OS493_014250-T1
OS493_014251-T1PROTEIN CBG20567
OS493_014252-T1LUPUS LA PROTEIN-RELATED
OS493_014253-T1DRAB11-RELATED
OS493_014254-T1DRAB11-RELATED
OS493_014255-T1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
OS493_014256-T130S RIBOSOMAL PROTEIN S14
OS493_014257-T1
OS493_014258-T1
OS493_014259-T1
OS493_014260-T1RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1
OS493_014261-T1
OS493_014262-T1RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1
OS493_014263-T1
OS493_014264-T1SERINE HYDROLASE RBBP9
OS493_014265-T1
OS493_014266-T1
OS493_014267-T1NUCLEIC ACID-BINDING PROTEINS SUPERFAMILY
OS493_014268-T1SERINE HYDROLASE RBBP9
OS493_014269-T1
OS493_014270-T1RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1
OS493_014271-T1RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1
OS493_014272-T1RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1
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