Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_014166-T1 | |
OS493_014167-T1 | |
OS493_014168-T1 | EPH RECEPTOR A5 |
OS493_014169-T1 | |
OS493_014170-T1 | ZINC FINGER PROTEIN |
OS493_014171-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
OS493_014172-T1 | ZINC FINGER PROTEIN |
OS493_014173-T1 | ZINC FINGER PROTEIN |
OS493_014174-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
OS493_014175-T1 | ZINC FINGER PROTEIN 200 |
OS493_014176-T1 | RNA POLYMERASE II NUCLEAR LOCALIZATION PROTEIN SLC7A6OS-RELATED |
OS493_014177-T1 | INWARD RECTIFIER POTASSIUM CHANNEL |
OS493_014180-T1 | ADENYLYL CYCLASE-ASSOCIATED PROTEIN |
OS493_014182-T1 | |
OS493_014183-T1 | |
OS493_014184-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
OS493_014185-T1 | |
OS493_014186-T1 | DISRUPTED IN SCHIZOPHRENIA 1 PROTEIN |
OS493_014187-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
OS493_014188-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
OS493_014190-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
OS493_014191-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
OS493_014192-T1 | MICROSPHERULE PROTEIN 1 |
OS493_014193-T1 | BINDING OXIDOREDUCTASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G17690)-RELATED |
OS493_014195-T1 | |
OS493_014196-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_014197-T1 | PROPERDIN |
OS493_014198-T1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
OS493_014199-T1 | TRANSCRIPTION INITIATION FACTOR TFIID |
OS493_014200-T1 | |
OS493_014201-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_014202-T1 | |
OS493_014203-T1 | LUPUS LA PROTEIN-RELATED |
OS493_014204-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_014206-T1 | |
OS493_014207-T1 | |
OS493_014208-T1 | |
OS493_014209-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_014210-T1 | |
OS493_014211-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_014212-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_014213-T1 | |
OS493_014214-T1 | GENE, 17359-RELATED |
OS493_014215-T1 | THYROTROPH EMBRYONIC FACTOR RELATED |
OS493_014216-T1 | TUBULIN POLYGLUTAMYLASE COMPLEX SUBUNIT 1 |
OS493_014217-T1 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
OS493_014218-T1 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
OS493_014219-T1 | |
OS493_014220-T1 | |
OS493_014221-T1 | MALONATE-SEMIALDEHYDE DEHYDROGENASE |