About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013950-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013952-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013953-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013954-T1CHONDROITIN SYNTHASE
OS493_013955-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013956-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013957-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013958-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013959-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013960-T1BATTENIN
OS493_013961-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013962-T1CHONDROITIN SYNTHASE
OS493_013963-T1CHONDROITIN SYNTHASE
OS493_013964-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013968-T1
OS493_013969-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013970-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_013971-T1CYCLIN
OS493_013972-T1PROTEIN C3ORF33
OS493_013973-T1SOLUTE CARRIER FAMILY 35
OS493_013974-T1BICOID-INTERACTING PROTEIN RELATED
OS493_013975-T1POLY [ADP-RIBOSE] POLYMERASE
OS493_013976-T1UNCHARACTERIZED
OS493_013977-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 30
OS493_013978-T1ARM REPEAT SUPERFAMILY PROTEIN
OS493_013979-T1ZYX102 PROTEIN
OS493_013980-T1SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N
OS493_013981-T1RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE
OS493_013982-T1TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT
OS493_013983-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
OS493_013984-T1PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
OS493_013985-T1
OS493_013986-T1WD40 REPEAT PROTEIN
OS493_013987-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
OS493_013988-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
OS493_013989-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
OS493_013990-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
OS493_013991-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
OS493_013992-T16-PHOSPHOGLUCONATE DEHYDROGENASE
OS493_013993-T1UNCHARACTERIZED PROTEIN C1ORF50
OS493_013994-T1TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11
OS493_013995-T1FANCONI ANEMIA GROUP E PROTEIN
OS493_013996-T1AAA-FAMILY ATPASE
OS493_013997-T1AAA-FAMILY ATPASE
OS493_013998-T126S PROTEASOME REGULATORY SUBUNIT
OS493_013999-T1
OS493_014000-T1
OS493_014001-T1
OS493_014002-T126S PROTEASOME REGULATORY SUBUNIT
OS493_014003-T1AAA-FAMILY ATPASE
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