Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_013950-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013952-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013953-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013954-T1 | CHONDROITIN SYNTHASE |
OS493_013955-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013956-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013957-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013958-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013959-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013960-T1 | BATTENIN |
OS493_013961-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013962-T1 | CHONDROITIN SYNTHASE |
OS493_013963-T1 | CHONDROITIN SYNTHASE |
OS493_013964-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013968-T1 | |
OS493_013969-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013970-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
OS493_013971-T1 | CYCLIN |
OS493_013972-T1 | PROTEIN C3ORF33 |
OS493_013973-T1 | SOLUTE CARRIER FAMILY 35 |
OS493_013974-T1 | BICOID-INTERACTING PROTEIN RELATED |
OS493_013975-T1 | POLY [ADP-RIBOSE] POLYMERASE |
OS493_013976-T1 | UNCHARACTERIZED |
OS493_013977-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 30 |
OS493_013978-T1 | ARM REPEAT SUPERFAMILY PROTEIN |
OS493_013979-T1 | ZYX102 PROTEIN |
OS493_013980-T1 | SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N |
OS493_013981-T1 | RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE |
OS493_013982-T1 | TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT |
OS493_013983-T1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
OS493_013984-T1 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
OS493_013985-T1 | |
OS493_013986-T1 | WD40 REPEAT PROTEIN |
OS493_013987-T1 | GLYCOSYLTRANSFERASE STELLO1-RELATED |
OS493_013988-T1 | GLYCOSYLTRANSFERASE STELLO1-RELATED |
OS493_013989-T1 | GLYCOSYLTRANSFERASE STELLO1-RELATED |
OS493_013990-T1 | GLYCOSYLTRANSFERASE STELLO1-RELATED |
OS493_013991-T1 | GLYCOSYLTRANSFERASE STELLO1-RELATED |
OS493_013992-T1 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
OS493_013993-T1 | UNCHARACTERIZED PROTEIN C1ORF50 |
OS493_013994-T1 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11 |
OS493_013995-T1 | FANCONI ANEMIA GROUP E PROTEIN |
OS493_013996-T1 | AAA-FAMILY ATPASE |
OS493_013997-T1 | AAA-FAMILY ATPASE |
OS493_013998-T1 | 26S PROTEASOME REGULATORY SUBUNIT |
OS493_013999-T1 | |
OS493_014000-T1 | |
OS493_014001-T1 | |
OS493_014002-T1 | 26S PROTEASOME REGULATORY SUBUNIT |
OS493_014003-T1 | AAA-FAMILY ATPASE |