About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013796-T1
OS493_013797-T1
OS493_013799-T1SOX TRANSCRIPTION FACTOR
OS493_013800-T1
OS493_013801-T1
OS493_013802-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013803-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
OS493_013804-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013805-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013806-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013807-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013808-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013809-T1SI:CH211-189E2.2
OS493_013810-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013811-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013812-T1ION_TRANS DOMAIN-CONTAINING PROTEIN
OS493_013813-T1HELICASE SRCAP-RELATED
OS493_013814-T1SNF2/RAD54 HELICASE FAMILY
OS493_013815-T1
OS493_013816-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_013817-T1UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN
OS493_013818-T1
OS493_013819-T1UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN
OS493_013820-T1GC-RICH SEQUENCE DNA-BINDING FACTOR
OS493_013821-T1DIGEORGE SYNDROME CRITICAL REGION 6 DGCR6 FAMILY MEMBER
OS493_013822-T1CTP SYNTHASE
OS493_013823-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_013824-T1IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
OS493_013825-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013826-T1
OS493_013827-T1COLLAGEN ALPHA
OS493_013828-T1COLLAGEN ALPHA
OS493_013829-T1COLLAGEN ALPHA
OS493_013830-T1COLLAGEN ALPHA
OS493_013831-T1COLLAGEN ALPHA
OS493_013832-T1OVOCHYMASE-RELATED
OS493_013833-T1CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
OS493_013834-T1
OS493_013835-T1
OS493_013836-T1C21ORF13-RELATED
OS493_013837-T1C21ORF13-RELATED
OS493_013838-T1TAIL-ANCHORED PROTEIN INSERTION RECEPTOR WRB
OS493_013839-T1
OS493_013840-T1ANTHRAX TOXIN RECEPTOR
OS493_013841-T1
OS493_013842-T1ANTHRAX TOXIN RECEPTOR
OS493_013843-T1COLLAGEN ALPHA
OS493_013844-T1
OS493_013845-T1
OS493_013846-T1
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