Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_013472-T1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
OS493_013473-T1 | CALCIUM BINDING PROTEINS |
OS493_013474-T1 | |
OS493_013475-T1 | |
OS493_013476-T1 | ACROSIN-RELATED |
OS493_013477-T1 | UNCHARACTERIZED |
OS493_013478-T1 | CELL CYCLE CONTROL PROTEIN 50 |
OS493_013479-T1 | COLLAGEN ALPHA |
OS493_013481-T1 | DNA-BINDING PROTEIN INHIBITOR |
OS493_013482-T1 | UBX DOMAIN CONTAINING PROTEIN |
OS493_013483-T1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
OS493_013484-T1 | |
OS493_013485-T1 | RFX TRANSCRIPTION FACTOR FAMILY |
OS493_013487-T1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
OS493_013491-T1 | GABA-B RECEPTOR |
OS493_013492-T1 | GABA-B RECEPTOR |
OS493_013493-T1 | GABA-B RECEPTOR |
OS493_013494-T1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
OS493_013495-T1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
OS493_013496-T1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
OS493_013497-T1 | TRANSAMIDASE |
OS493_013498-T1 | TRANSAMIDASE |
OS493_013499-T1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B |
OS493_013500-T1 | 60S RIBOSOMAL PROTEIN L12 |
OS493_013501-T1 | ALPHA-/EPSILON-SARCOGLYCAN FAMILY MEMBER |
OS493_013502-T1 | |
OS493_013503-T1 | N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT |
OS493_013504-T1 | POLY ADP-RIBOSE GLYCOHYDROLASE |
OS493_013505-T1 | POLY ADP-RIBOSE GLYCOHYDROLASE |
OS493_013506-T1 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
OS493_013507-T1 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
OS493_013508-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_013509-T1 | CHCHD1 |
OS493_013510-T1 | |
OS493_013511-T1 | ACYL-COENZYME A THIOESTERASE-RELATED |
OS493_013512-T1 | ACYL-COENZYME A THIOESTERASE-RELATED |
OS493_013513-T1 | 40S RIBOSOMAL PROTEIN S24 |
OS493_013514-T1 | UNCHARACTERIZED |
OS493_013515-T1 | SYNAPTOTAGMIN |
OS493_013516-T1 | SYNAPTOTAGMIN |
OS493_013517-T1 | SYNAPTOTAGMIN |
OS493_013518-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
OS493_013519-T1 | PDZ AND LIM DOMAIN PROTEIN ZASP |
OS493_013520-T1 | |
OS493_013521-T1 | THYMUS, BRAIN AND TESTES-ASSOCIATED |
OS493_013522-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_013523-T1 | SOLUTE CARRIER FAMILY 17 |
OS493_013524-T1 | GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1 |
OS493_013525-T1 | |
OS493_013526-T1 |