Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_013194-T1 | EXPORTIN-6 |
OS493_013195-T1 | |
OS493_013196-T1 | |
OS493_013197-T1 | ZINC FINGER PROTEIN |
OS493_013198-T1 | |
OS493_013199-T1 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
OS493_013200-T1 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
OS493_013201-T1 | ZINC FINGER PROTEIN |
OS493_013202-T1 | IP01015P-RELATED |
OS493_013203-T1 | ACONITATE HYDRATASE B |
OS493_013204-T1 | TRANSMEMBRANE PROTEIN 220 |
OS493_013205-T1 | |
OS493_013206-T1 | |
OS493_013207-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 |
OS493_013208-T1 | |
OS493_013209-T1 | |
OS493_013210-T1 | RNA-BINDING PROTEIN LUC7-RELATED |
OS493_013211-T1 | |
OS493_013212-T1 | UNCHARACTERIZED |
OS493_013213-T1 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
OS493_013214-T1 | MYOSIN LIGHT CHAIN 1, 3 |
OS493_013215-T1 | MYOSIN LIGHT CHAIN 1, 3 |
OS493_013216-T1 | ADENYLOSUCCINATE LYASE |
OS493_013217-T1 | ADENYLOSUCCINATE LYASE |
OS493_013218-T1 | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Y |
OS493_013219-T1 | HOMEOBOX PROTEIN ARISTALESS |
OS493_013220-T1 | HOMEOBOX PROTEIN UNC-4 HOMOLOG |
OS493_013221-T1 | HOMEOBOX PROTEIN MOX |
OS493_013222-T1 | |
OS493_013223-T1 | HISTONE H1 |
OS493_013224-T1 | CCR4 NOT-RELATED |
OS493_013225-T1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
OS493_013226-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 154 |
OS493_013227-T1 | |
OS493_013228-T1 | RIBONUCLEASE P SUBUNIT P21 |
OS493_013229-T1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
OS493_013230-T1 | UNCHARACTERIZED |
OS493_013231-T1 | UNCHARACTERIZED |
OS493_013232-T1 | EXOCYST COMPLEX PROTEIN EXO70 |
OS493_013233-T1 | EXOCYST COMPLEX PROTEIN EXO70 |
OS493_013234-T1 | |
OS493_013235-T1 | |
OS493_013236-T1 | UBA-LIKE DOMAIN-CONTAINING PROTEIN 2 |
OS493_013237-T1 | |
OS493_013238-T1 | |
OS493_013239-T1 | LD33804P |
OS493_013240-T1 | TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 2 |
OS493_013241-T1 | |
OS493_013242-T1 | TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 2 |
OS493_013243-T1 |