About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013194-T1EXPORTIN-6
OS493_013195-T1
OS493_013196-T1
OS493_013197-T1ZINC FINGER PROTEIN
OS493_013198-T1
OS493_013199-T1KRAB AND ZINC FINGER DOMAIN-CONTAINING
OS493_013200-T1FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
OS493_013201-T1ZINC FINGER PROTEIN
OS493_013202-T1IP01015P-RELATED
OS493_013203-T1ACONITATE HYDRATASE B
OS493_013204-T1TRANSMEMBRANE PROTEIN 220
OS493_013205-T1
OS493_013206-T1
OS493_013207-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3
OS493_013208-T1
OS493_013209-T1
OS493_013210-T1RNA-BINDING PROTEIN LUC7-RELATED
OS493_013211-T1
OS493_013212-T1UNCHARACTERIZED
OS493_013213-T1SODIUM/POTASSIUM/CALCIUM EXCHANGER
OS493_013214-T1MYOSIN LIGHT CHAIN 1, 3
OS493_013215-T1MYOSIN LIGHT CHAIN 1, 3
OS493_013216-T1ADENYLOSUCCINATE LYASE
OS493_013217-T1ADENYLOSUCCINATE LYASE
OS493_013218-T1PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Y
OS493_013219-T1HOMEOBOX PROTEIN ARISTALESS
OS493_013220-T1HOMEOBOX PROTEIN UNC-4 HOMOLOG
OS493_013221-T1HOMEOBOX PROTEIN MOX
OS493_013222-T1
OS493_013223-T1HISTONE H1
OS493_013224-T1CCR4 NOT-RELATED
OS493_013225-T1SPERMATOGENESIS-ASSOCIATED PROTEIN 20
OS493_013226-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 154
OS493_013227-T1
OS493_013228-T1RIBONUCLEASE P SUBUNIT P21
OS493_013229-T1PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL
OS493_013230-T1UNCHARACTERIZED
OS493_013231-T1UNCHARACTERIZED
OS493_013232-T1EXOCYST COMPLEX PROTEIN EXO70
OS493_013233-T1EXOCYST COMPLEX PROTEIN EXO70
OS493_013234-T1
OS493_013235-T1
OS493_013236-T1UBA-LIKE DOMAIN-CONTAINING PROTEIN 2
OS493_013237-T1
OS493_013238-T1
OS493_013239-T1LD33804P
OS493_013240-T1TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 2
OS493_013241-T1
OS493_013242-T1TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 2
OS493_013243-T1
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