About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_012933-T1PROTEIN STPG4
OS493_012934-T1
OS493_012935-T1
OS493_012936-T1HYPOTHETICAL HEAT DOMAIN-CONTAINING
OS493_012937-T1CYTOCHROME C OXIDASE PROTEIN 20
OS493_012938-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 97
OS493_012939-T1
OS493_012940-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 61
OS493_012941-T1ANKYRIN REPEAT PROTEIN
OS493_012942-T126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3
OS493_012943-T1
OS493_012944-T126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3
OS493_012945-T1MEMBRANE-ANCHORED JUNCTION PROTEIN MAJIN
OS493_012946-T1
OS493_012947-T1
OS493_012948-T1
OS493_012949-T1THADA/DEATH RECEPTOR INTERACTING PROTEIN
OS493_012950-T1
OS493_012951-T1SYNAPTOTAGMIN 14, ISOFORM D
OS493_012952-T1NUCLEAR RNA EXPORT FACTOR
OS493_012953-T1NUCLEAR RNA EXPORT FACTOR
OS493_012954-T1
OS493_012955-T1PROTEIN ARGININE N-METHYLTRANSFERASE
OS493_012956-T1TANDEM PH DOMAIN CONTAINING PROTEIN
OS493_012957-T1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
OS493_012958-T1
OS493_012959-T1
OS493_012960-T1
OS493_012961-T1
OS493_012962-T1
OS493_012963-T1
OS493_012964-T1
OS493_012965-T1
OS493_012966-T1
OS493_012967-T1
OS493_012968-T1
OS493_012969-T1
OS493_012970-T1
OS493_012971-T1SI:DKEY-29D5.2
OS493_012972-T1
OS493_012973-T1
OS493_012974-T1
OS493_012976-T1
OS493_012977-T1ACROSIN-RELATED
OS493_012978-T1TRANSMEMBRANE PROTEASE SERINE
OS493_012979-T1CARBONIC ANHYDRASE
OS493_012980-T1PROTEIN DISPATCHED-RELATED
OS493_012981-T1PROTEIN DISPATCHED-RELATED
OS493_012982-T1PROTEIN DISPATCHED-RELATED
OS493_012983-T1PROTEIN DISPATCHED-RELATED
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