Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_012777-T1 | FUCOSE-1-PHOSPHATE GUANYLYLTRANSFERASE |
OS493_012778-T1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B |
OS493_012779-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
OS493_012780-T1 | |
OS493_012781-T1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B |
OS493_012782-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
OS493_012783-T1 | |
OS493_012784-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_012785-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_012786-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_012787-T1 | |
OS493_012788-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_012789-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_012790-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_012791-T1 | PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED |
OS493_012792-T1 | PUTATIVE PHOSPHOTRANSFERASE |
OS493_012793-T1 | PYRUVATE CARBOXYLASE |
OS493_012794-T1 | PYRUVATE CARBOXYLASE |
OS493_012795-T1 | PYRUVATE CARBOXYLASE |
OS493_012796-T1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 |
OS493_012797-T1 | |
OS493_012798-T1 | ACIDIC FIBROBLAST GROWTH FACTOR INTRACELLULAR BINDING PROTEIN |
OS493_012799-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_012800-T1 | ACIDIC FIBROBLAST GROWTH FACTOR INTRACELLULAR BINDING PROTEIN |
OS493_012802-T1 | |
OS493_012803-T1 | CARBONIC ANHYDRASE |
OS493_012804-T1 | |
OS493_012805-T1 | CARBONIC ANHYDRASE |
OS493_012806-T1 | CARBONIC ANHYDRASE |
OS493_012807-T1 | CARBONIC ANHYDRASE |
OS493_012808-T1 | CARBONIC ANHYDRASE |
OS493_012809-T1 | |
OS493_012810-T1 | |
OS493_012811-T1 | |
OS493_012812-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_012813-T1 | |
OS493_012814-T1 | |
OS493_012815-T1 | |
OS493_012817-T1 | |
OS493_012818-T1 | |
OS493_012819-T1 | |
OS493_012820-T1 | |
OS493_012821-T1 | |
OS493_012822-T1 | |
OS493_012823-T1 | |
OS493_012824-T1 | |
OS493_012826-T1 | |
OS493_012827-T1 | |
OS493_012828-T1 | |
OS493_012829-T1 |