Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_012727-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_012728-T1 | UNCHARACTERIZED |
OS493_012729-T1 | SCAFFOLD ATTACHMENT FACTOR B-RELATED |
OS493_012730-T1 | SCAFFOLD ATTACHMENT FACTOR B-RELATED |
OS493_012731-T1 | |
OS493_012732-T1 | L-ASPARAGINASE |
OS493_012733-T1 | L-ASPARAGINASE |
OS493_012734-T1 | |
OS493_012735-T1 | BINDING PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G14430)-RELATED |
OS493_012736-T1 | BINDING PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G14430)-RELATED |
OS493_012737-T1 | BINDING PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G14430)-RELATED |
OS493_012738-T1 | |
OS493_012739-T1 | BINDING PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G14430)-RELATED |
OS493_012740-T1 | BINDING PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G14430)-RELATED |
OS493_012741-T1 | |
OS493_012742-T1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
OS493_012743-T1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
OS493_012744-T1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
OS493_012745-T1 | BLR2807 PROTEIN |
OS493_012746-T1 | BLR2807 PROTEIN |
OS493_012747-T1 | |
OS493_012748-T1 | |
OS493_012749-T1 | NXPE FAMILY MEMBER |
OS493_012750-T1 | |
OS493_012751-T1 | |
OS493_012752-T1 | |
OS493_012753-T1 | |
OS493_012754-T1 | |
OS493_012755-T1 | |
OS493_012756-T1 | |
OS493_012757-T1 | BLR2807 PROTEIN |
OS493_012758-T1 | |
OS493_012759-T1 | RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG |
OS493_012760-T1 | REPLICATION PROTEIN A-RELATED |
OS493_012761-T1 | GTP CYCLOHYDROLASE I |
OS493_012762-T1 | STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED |
OS493_012763-T1 | CELL GROWTH REGULATOR WITH RING FINGER DOMAIN PROTEIN 1 |
OS493_012764-T1 | L-RHAMNOSE MUTAROTASE |
OS493_012765-T1 | UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN |
OS493_012766-T1 | COILED-COIL DOMAIN CONTAINING 198 |
OS493_012767-T1 | RING ZINC FINGER PROTEIN |
OS493_012768-T1 | SERUM RESPONSE FACTOR HOMOLOG |
OS493_012769-T1 | TETRATRICOPEPTIDE-LIKE HELICAL |
OS493_012770-T1 | SEEDY PROTEIN A/C FAMILY MEMBER |
OS493_012771-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
OS493_012772-T1 | |
OS493_012773-T1 | |
OS493_012774-T1 | UPF0692 PROTEIN C19ORF54 |
OS493_012775-T1 | PINN |
OS493_012776-T1 |