About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_012458-T1
OS493_012459-T1
OS493_012460-T1
OS493_012461-T1
OS493_012462-T1
OS493_012463-T1
OS493_012464-T1ZGC:195170
OS493_012465-T1
OS493_012466-T1
OS493_012467-T1
OS493_012468-T1
OS493_012469-T1
OS493_012470-T1
OS493_012471-T1
OS493_012472-T1
OS493_012473-T1
OS493_012474-T1
OS493_012475-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_012476-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_012477-T1
OS493_012478-T1
OS493_012479-T1
OS493_012480-T1
OS493_012481-T1
OS493_012482-T1SERINE-THREONINE PROTEIN KINASE
OS493_012483-T1
OS493_012484-T1
OS493_012486-T1
OS493_012487-T1
OS493_012488-T1
OS493_012490-T1
OS493_012491-T1AGAP005574-PA
OS493_012492-T1ZGC:195170
OS493_012493-T1
OS493_012494-T1GH08155P
OS493_012495-T1URACIL-DNA GLYCOSYLASE
OS493_012497-T12,5-DIKETO-D-GLUCONIC ACID REDUCTASE
OS493_012498-T1
OS493_012499-T1
OS493_012500-T1THREE PRIME REPAIR EXONUCLEASE 1, 2
OS493_012501-T1MYOTUBULARIN-RELATED
OS493_012502-T1MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
OS493_012503-T1
OS493_012504-T1OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC
OS493_012505-T1
OS493_012506-T1TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
OS493_012507-T1TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
OS493_012508-T1TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
OS493_012509-T1TRAF-TYPE ZINC FINGER PROTEIN-RELATED
OS493_012510-T1
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