About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004930-T1-
OS493_004931-T1-
OS493_004932-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12
OS493_004933-T1LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN
OS493_004934-T1PREFOLDIN SUBUNIT 4
OS493_004935-T137S RIBOSOMAL PROTEIN S22
OS493_004936-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_004937-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_004938-T1-
OS493_004939-T1TARGETING PROTEIN FOR XKLP2
OS493_004940-T1FG-GAP REPEAT-CONTAINING PROTEIN
OS493_004941-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
OS493_004942-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_004943-T1-
OS493_004944-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004945-T1-
OS493_004946-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004947-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004948-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004949-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
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