About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_012178-T1
OS493_012180-T1RING FINGER DOMAIN-CONTAINING
OS493_012181-T1SPERMATOGENESIS-ASSOCIATED PROTEIN 24
OS493_012182-T1GRANULIN
OS493_012183-T1MYOTROPHIN
OS493_012184-T1
OS493_012185-T1
OS493_012186-T1O-GLCNACASE
OS493_012187-T1HEAT SHOCK PROTEIN 70KDA
OS493_012188-T1PHOSPHATIDYLINOSITOL GLYCAN, CLASS N
OS493_012189-T1HOMEOBOX PROTEIN SIX
OS493_012190-T1LIPID PHOSPHATE PHOSPHATASE
OS493_012191-T1ACTIN
OS493_012192-T1MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE
OS493_012193-T1PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3
OS493_012194-T1COPPER HOMEOSTASIS PROTEIN CUTC
OS493_012195-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 27
OS493_012196-T1
OS493_012197-T1
OS493_012198-T1
OS493_012199-T1
OS493_012200-T1
OS493_012201-T1
OS493_012202-T1
OS493_012203-T1
OS493_012204-T1
OS493_012205-T1
OS493_012206-T1
OS493_012207-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_012208-T1
OS493_012209-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_012210-T1ACROSIN-RELATED
OS493_012211-T1TRYPSIN-RELATED
OS493_012212-T1TRYPSIN-RELATED
OS493_012213-T1TRANSMEMBRANE PROTEASE SERINE
OS493_012214-T1TRYPSIN-RELATED
OS493_012215-T1TRYPSIN-RELATED
OS493_012216-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_012217-T1TRYPSIN-RELATED
OS493_012219-T1
OS493_012220-T1
OS493_012229-T1
OS493_012234-T1
OS493_012235-T1
OS493_012236-T1
OS493_012237-T1
OS493_012238-T1
OS493_012239-T1
OS493_012240-T1
OS493_012241-T1
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