About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004870-T1OTU DOMAIN CONTAINING PROTEIN
OS493_004871-T1MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED
OS493_004872-T1TRNA-SPECIFIC ADENOSINE DEAMINASE 1
OS493_004873-T1TRNA-SPECIFIC ADENOSINE DEAMINASE 1
OS493_004874-T1CHST5 PROTEIN
OS493_004875-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_004876-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_004877-T1D-LACTATE DEHYDROGENASE
OS493_004878-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_004879-T1IONOTROPIC GLUTAMATE RECEPTOR
OS493_004880-T1LYSINE-SPECIFIC DEMETHYLASE
OS493_004881-T1-
OS493_004882-T1-
OS493_004883-T1DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED
OS493_004884-T1-
OS493_004885-T1DNA LIGASE
OS493_004886-T1-
OS493_004887-T1-
OS493_004888-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_004889-T1-
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