Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_012018-T1 | SERINE/ARGININE RICH SPLICING FACTOR |
OS493_012019-T1 | HISTONE RNA HAIRPIN-BINDING PROTEIN |
OS493_012020-T1 | GH10160P |
OS493_012021-T1 | PROLINE-RICH NUCLEAR RECEPTOR COACTIVATOR |
OS493_012022-T1 | TELOMERIC REPEAT-BINDING FACTOR 2 TERF2 |
OS493_012023-T1 | |
OS493_012024-T1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
OS493_012025-T1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
OS493_012026-T1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
OS493_012027-T1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
OS493_012028-T1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
OS493_012029-T1 | PURPLE ACID PHOSPHATASE-RELATED |
OS493_012030-T1 | PURPLE ACID PHOSPHATASE-RELATED |
OS493_012031-T1 | |
OS493_012032-T1 | |
OS493_012033-T1 | SEC15 |
OS493_012034-T1 | SEC15 |
OS493_012035-T1 | TUDOR DOMAIN CONTAINING PROTEIN |
OS493_012036-T1 | ALPHA-L-FUCOSIDASE |
OS493_012037-T1 | |
OS493_012038-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
OS493_012039-T1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
OS493_012040-T1 | |
OS493_012041-T1 | URACIL-DNA GLYCOSYLASE |
OS493_012042-T1 | MITOFILIN |
OS493_012044-T1 | |
OS493_012045-T1 | EXPORTIN 4,7-RELATED |
OS493_012046-T1 | EXPORTIN 4,7-RELATED |
OS493_012048-T1 | EXPORTIN 4,7-RELATED |
OS493_012049-T1 | POLYCYSTIN-1 |
OS493_012050-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_012051-T1 | RAI16 PROTEIN-RELATED |
OS493_012052-T1 | SERINE PROTEASE FAMILY S1C HTRA-RELATED |
OS493_012053-T1 | |
OS493_012054-T1 | |
OS493_012055-T1 | MACROPHAGE ERYTHROBLAST ATTACHER-RELATED |
OS493_012056-T1 | PROTEIN C20ORF43 HOMOLOG |
OS493_012057-T1 | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED |
OS493_012058-T1 | UNCHARACTERIZED |
OS493_012059-T1 | |
OS493_012060-T1 | |
OS493_012061-T1 | POLYCOMB GROUP RING FINGER PROTEIN |
OS493_012062-T1 | |
OS493_012063-T1 | POLYCOMB GROUP RING FINGER PROTEIN |
OS493_012064-T1 | POLYCOMB GROUP RING FINGER PROTEIN |
OS493_012065-T1 | POLYCOMB GROUP RING FINGER PROTEIN |
OS493_012066-T1 | HOMEOBOX PROTEIN EMX-RELATED |
OS493_012067-T1 | HERMANSKY-PUDLAK SYNDROME PROTEIN 1 |
OS493_012068-T1 | |
OS493_012069-T1 |