Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_011914-T1 | |
OS493_011915-T1 | |
OS493_011916-T1 | GLPR-RELATED TRANSCRIPTIONAL REPRESSOR |
OS493_011917-T1 | DACTYLIN |
OS493_011918-T1 | RAS-RELATED PROTEIN RAB |
OS493_011919-T1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
OS493_011920-T1 | E3 UBIQUITIN-PROTEIN LIGASE TM129 |
OS493_011921-T1 | RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS |
OS493_011922-T1 | TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER |
OS493_011923-T1 | TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER |
OS493_011924-T1 | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED |
OS493_011925-T1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
OS493_011926-T1 | CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED |
OS493_011927-T1 | FRUCTOSE-1-PHOSPHATE PHOSPHATASE |
OS493_011928-T1 | FRUCTOSE-1-PHOSPHATE PHOSPHATASE |
OS493_011929-T1 | |
OS493_011930-T1 | HEAVYWEIGHT, ISOFORM A |
OS493_011931-T1 | |
OS493_011932-T1 | |
OS493_011933-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 125 |
OS493_011934-T1 | |
OS493_011935-T1 | |
OS493_011936-T1 | |
OS493_011937-T1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
OS493_011938-T1 | UBIQUITIN-PROTEIN LIGASE E3C |
OS493_011939-T1 | CHARGED MULTIVESICULAR BODY PROTEIN |
OS493_011940-T1 | ASPARTATE AMINOTRANSFERASE |
OS493_011941-T1 | ASPARTATE AMINOTRANSFERASE |
OS493_011942-T1 | |
OS493_011943-T1 | |
OS493_011944-T1 | |
OS493_011945-T1 | |
OS493_011946-T1 | |
OS493_011947-T1 | |
OS493_011948-T1 | UNCHARACTERIZED |
OS493_011949-T1 | INNER CENTROMERE PROTEIN |
OS493_011950-T1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
OS493_011951-T1 | |
OS493_011952-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_011953-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_011955-T1 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
OS493_011956-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_011957-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_011958-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_011959-T1 | |
OS493_011960-T1 | |
OS493_011961-T1 | NADH-UBIQUINONE OXIDOREDUCTASE ASHI SUBUNIT |
OS493_011962-T1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
OS493_011963-T1 | DYNEIN HEAVY CHAIN |
OS493_011964-T1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |