Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_011588-T1 | |
OS493_011589-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_011591-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_011592-T1 | VACUOLAR ATP SYNTHASE SUBUNIT S1 |
OS493_011593-T1 | |
OS493_011594-T1 | |
OS493_011595-T1 | SYNAPSIN |
OS493_011596-T1 | METALLOPROTEASE INHIBITOR |
OS493_011597-T1 | METALLOPROTEASE INHIBITOR |
OS493_011598-T1 | METALLOPROTEASE INHIBITOR |
OS493_011599-T1 | METALLOPROTEASE INHIBITOR |
OS493_011600-T1 | METALLOPROTEASE INHIBITOR |
OS493_011602-T1 | SYNAPSIN |
OS493_011603-T1 | OS02G0815200 PROTEIN |
OS493_011604-T1 | |
OS493_011605-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_011606-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_011607-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_011608-T1 | METALLOPROTEASE INHIBITOR |
OS493_011609-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_011610-T1 | METALLOPROTEASE INHIBITOR |
OS493_011611-T1 | METALLOPROTEASE INHIBITOR |
OS493_011612-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_011613-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_011615-T1 | ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED |
OS493_011616-T1 | RP42 RELATED |
OS493_011617-T1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
OS493_011618-T1 | RNA RECOGNITION RRM/RNP DOMAIN |
OS493_011619-T1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE-RELATED |
OS493_011620-T1 | SARCOGLYCAN |
OS493_011621-T1 | SARCOGLYCAN |
OS493_011622-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
OS493_011623-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
OS493_011624-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
OS493_011625-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
OS493_011626-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
OS493_011627-T1 | |
OS493_011628-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
OS493_011629-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
OS493_011630-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
OS493_011631-T1 | |
OS493_011632-T1 | |
OS493_011633-T1 | PROTEIN DIAPHANOUS |
OS493_011634-T1 | PROTEIN DIAPHANOUS |
OS493_011635-T1 | PROTEIN DIAPHANOUS |
OS493_011636-T1 | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED |
OS493_011637-T1 | |
OS493_011638-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
OS493_011639-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_011640-T1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 |