About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_011484-T1
OS493_011485-T1
OS493_011486-T1
OS493_011487-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_011488-T1ZGC:195170
OS493_011489-T1
OS493_011490-T1
OS493_011491-T1
OS493_011492-T1
OS493_011493-T1
OS493_011494-T1
OS493_011495-T1
OS493_011496-T1WD REPEAT-CONTAINING PROTEIN 48
OS493_011497-T1
OS493_011498-T1
OS493_011499-T1RING-TYPE DOMAIN-CONTAINING PROTEIN
OS493_011500-T1
OS493_011501-T1
OS493_011502-T1RING-TYPE DOMAIN-CONTAINING PROTEIN
OS493_011503-T1
OS493_011504-T1RING-TYPE DOMAIN-CONTAINING PROTEIN
OS493_011505-T1
OS493_011506-T1
OS493_011508-T1RING-TYPE DOMAIN-CONTAINING PROTEIN
OS493_011509-T1
OS493_011510-T1
OS493_011511-T1RING-TYPE DOMAIN-CONTAINING PROTEIN
OS493_011512-T1HYR DOMAIN-CONTAINING PROTEIN
OS493_011513-T1MULTICOPPER OXIDASE-RELATED
OS493_011514-T1FI04643P-RELATED
OS493_011515-T1MULTICOPPER OXIDASE-RELATED
OS493_011516-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_011517-T1MULTICOPPER OXIDASE-RELATED
OS493_011518-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_011519-T1G PROTEIN-COUPLED RECEPTOR
OS493_011520-T1OPSIN
OS493_011521-T1COPPER AMINE OXIDASE
OS493_011522-T1MIP04163P
OS493_011523-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE
OS493_011524-T1GABA-B RECEPTOR
OS493_011525-T1CRAMPED PROTEIN
OS493_011526-T1THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9
OS493_011527-T1TRNA (GUANINE-9-) METHYLTRANSFERASE
OS493_011528-T1MIR DOMAIN-CONTAINING PROTEIN
OS493_011529-T1RYANODINE RECEPTOR AND IP3 RECEPTOR
OS493_011530-T1RYANODINE RECEPTOR AND IP3 RECEPTOR
OS493_011531-T1GLYCERATE KINASE
OS493_011532-T1DYSTROGLYCAN-RELATED
OS493_011533-T1
OS493_011534-T1
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