Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_011641-T1 | |
OS493_011642-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_011643-T1 | |
OS493_011644-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_011645-T1 | UFM1-SPECIFIC PROTEASE 2 |
OS493_011646-T1 | RNA 2',3'-CYCLIC PHOSPHODIESTERASE |
OS493_011647-T1 | |
OS493_011648-T1 | IDURONATE 2-SULFATASE |
OS493_011649-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
OS493_011650-T1 | |
OS493_011651-T1 | FAM11A, B PROTEIN |
OS493_011652-T1 | |
OS493_011653-T1 | |
OS493_011654-T1 | |
OS493_011655-T1 | |
OS493_011656-T1 | INVERTED FORMIN-2 |
OS493_011657-T1 | |
OS493_011658-T1 | INVERTED FORMIN-2 |
OS493_011659-T1 | INVERTED FORMIN-2 |
OS493_011660-T1 | |
OS493_011661-T1 | |
OS493_011662-T1 | REGULATORY FACTOR X-ASSOCIATED PROTEIN |
OS493_011663-T1 | |
OS493_011664-T1 | PROTEIN FAM181B |
OS493_011665-T1 | |
OS493_011666-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_011667-T1 | |
OS493_011668-T1 | FANCONI ANEMIA GROUP B PROTEIN |
OS493_011669-T1 | |
OS493_011670-T1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
OS493_011671-T1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
OS493_011672-T1 | |
OS493_011675-T1 | PBS LYASE HEAT-LIKE PROTEIN |
OS493_011676-T1 | |
OS493_011677-T1 | |
OS493_011678-T1 | |
OS493_011679-T1 | REGULATOR OF G-PROTEIN SIGNALING LOCO |
OS493_011680-T1 | |
OS493_011681-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_011682-T1 | SI:CH211-175M2.5 |
OS493_011683-T1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED |
OS493_011684-T1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
OS493_011685-T1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
OS493_011686-T1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
OS493_011687-T1 | |
OS493_011688-T1 | |
OS493_011690-T1 | DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19 |
OS493_011691-T1 | DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19 |
OS493_011692-T1 | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED |
OS493_011693-T1 | MONOCARBOXYLATE TRANSPORTER |