Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_011694-T1 | ACYL-COA DEHYDROGENASE |
OS493_011696-T1 | |
OS493_011697-T1 | |
OS493_011698-T1 | |
OS493_011699-T1 | SOLUBLE LIVER ANTIGEN/LIVER PANCREAS ANTIGEN |
OS493_011700-T1 | METHYL-CPG BINDING PROTEIN, DROSOPHILA |
OS493_011703-T1 | TUBULIN |
OS493_011704-T1 | |
OS493_011705-T1 | UBIQUITIN THIOESTERASE |
OS493_011706-T1 | WD REPEAT PROTEIN |
OS493_011707-T1 | WD REPEAT PROTEIN |
OS493_011708-T1 | WD REPEAT PROTEIN |
OS493_011709-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_011710-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_011711-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_011712-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_011713-T1 | |
OS493_011714-T1 | MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED |
OS493_011716-T1 | G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE |
OS493_011717-T1 | FER-1-LIKE |
OS493_011718-T1 | FER-1-LIKE |
OS493_011719-T1 | FER-1-LIKE |
OS493_011724-T1 | FER-1-LIKE |
OS493_011725-T1 | FER-1-LIKE |
OS493_011726-T1 | FER-1-LIKE |
OS493_011727-T1 | NHL REPEAT-CONTAINING PROTEIN 2 |
OS493_011728-T1 | FER-1-LIKE |
OS493_011729-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_011730-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_011731-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_011732-T1 | FER-1-LIKE |
OS493_011733-T1 | FER-1-LIKE |
OS493_011734-T1 | FER-1-LIKE |
OS493_011735-T1 | ARM REPEAT SUPERFAMILY PROTEIN |
OS493_011736-T1 | ARM REPEAT SUPERFAMILY PROTEIN |
OS493_011737-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_011738-T1 | BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II |
OS493_011739-T1 | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 |
OS493_011740-T1 | SMALL INTEGRAL MEMBRANE PROTEIN 12 |
OS493_011741-T1 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE |
OS493_011742-T1 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE |
OS493_011743-T1 | COLLAGEN ALPHA |
OS493_011744-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_011745-T1 | |
OS493_011746-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_011747-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_011748-T1 | HEPARANASE |
OS493_011749-T1 | SULFOTRANSFERASE SULT |
OS493_011750-T1 | SULFOTRANSFERASE SULT |
OS493_011751-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |