Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_011862-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_011863-T1 | CALCIUM BINDING PROTEINS |
OS493_011864-T1 | |
OS493_011865-T1 | |
OS493_011866-T1 | |
OS493_011867-T1 | |
OS493_011868-T1 | |
OS493_011869-T1 | |
OS493_011870-T1 | |
OS493_011871-T1 | 4.1 G PROTEIN |
OS493_011872-T1 | 4.1 G PROTEIN |
OS493_011873-T1 | METALLOPHOSPHOESTERASE, CALCINEURIN SUPERFAMILY |
OS493_011874-T1 | PROTEIN SERAC1 |
OS493_011876-T1 | TRYPSIN-RELATED |
OS493_011877-T1 | HOMEOBOX PROTEIN MSX |
OS493_011878-T1 | HOMEOBOX PROTEIN NKX |
OS493_011879-T1 | HOMEOBOX PROTEIN NKX |
OS493_011880-T1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 16 |
OS493_011881-T1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 16 |
OS493_011882-T1 | TRANSCRIPTION FACTOR LBX |
OS493_011883-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_011884-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_011885-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_011886-T1 | |
OS493_011887-T1 | |
OS493_011888-T1 | |
OS493_011889-T1 | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 |
OS493_011890-T1 | PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
OS493_011891-T1 | DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2 |
OS493_011892-T1 | DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2 |
OS493_011893-T1 | SIDEROFLEXIN |
OS493_011894-T1 | RE48077P |
OS493_011895-T1 | UNCHARACTERIZED |
OS493_011896-T1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
OS493_011897-T1 | RIM BINDING PROTEIN-RELATED |
OS493_011898-T1 | RIM BINDING PROTEIN-RELATED |
OS493_011900-T1 | |
OS493_011901-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_011902-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_011903-T1 | RIBOSE-5-PHOSPHATE ISOMERASE |
OS493_011904-T1 | UNCHARACTERIZED PROTEIN YJBQ-RELATED |
OS493_011905-T1 | FUKUTIN RELATED PROTEIN |
OS493_011906-T1 | FUKUTIN RELATED PROTEIN |
OS493_011907-T1 | POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 2 |
OS493_011908-T1 | TEX261 PROTEIN |
OS493_011909-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_011910-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 53 |
OS493_011911-T1 | ADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 2 |
OS493_011912-T1 | |
OS493_011913-T1 |