Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_011965-T1 | CORTISTATIN |
OS493_011966-T1 | LOC361192 |
OS493_011967-T1 | 60S RIBOSOMAL PROTEIN L36A/L44 |
OS493_011968-T1 | NIPSNAP-RELATED |
OS493_011969-T1 | LD44813P |
OS493_011970-T1 | |
OS493_011971-T1 | |
OS493_011972-T1 | LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN |
OS493_011973-T1 | |
OS493_011974-T1 | |
OS493_011975-T1 | JNK-INTERACTING PROTEIN 1-LIKE PROTEIN |
OS493_011976-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_011977-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_011978-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_011979-T1 | |
OS493_011980-T1 | NO EXINE FORMATION 1 |
OS493_011981-T1 | NO EXINE FORMATION 1 |
OS493_011982-T1 | DYNEIN HEAVY CHAIN |
OS493_011983-T1 | DYNEIN HEAVY CHAIN |
OS493_011984-T1 | DYNEIN HEAVY CHAIN |
OS493_011986-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_011987-T1 | |
OS493_011988-T1 | |
OS493_011989-T1 | |
OS493_011990-T1 | |
OS493_011991-T1 | |
OS493_011992-T1 | |
OS493_011993-T1 | |
OS493_011994-T1 | |
OS493_011995-T1 | |
OS493_011996-T1 | |
OS493_011997-T1 | |
OS493_011999-T1 | MASK PROTEIN |
OS493_012000-T1 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
OS493_012001-T1 | |
OS493_012002-T1 | |
OS493_012003-T1 | |
OS493_012004-T1 | |
OS493_012005-T1 | |
OS493_012006-T1 | |
OS493_012007-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_012008-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
OS493_012009-T1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
OS493_012010-T1 | UNCHARACTERIZED |
OS493_012011-T1 | |
OS493_012012-T1 | MITOCHONDRIA-EATING PROTEIN-RELATED |
OS493_012013-T1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
OS493_012014-T1 | C20ORF30 PROTEIN |
OS493_012015-T1 | LIMBIN/ELLIS-VAN CREVELD PROTEIN |
OS493_012016-T1 | BROMODOMAIN-CONTAINING PROTEIN 8 |