About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_012122-T1
OS493_012123-T1
OS493_012124-T1
OS493_012125-T1
OS493_012126-T1MYND-TYPE DOMAIN-CONTAINING PROTEIN
OS493_012128-T1
OS493_012129-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_012130-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_012131-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_012133-T1HOMEOBOX PROTEIN ARISTALESS
OS493_012134-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_012135-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_012136-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_012137-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_012138-T1LEUCOKININ RECEPTOR-RELATED
OS493_012139-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_012140-T1CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA
OS493_012141-T1AGAP001623-PA
OS493_012142-T1
OS493_012143-T1AGAP001623-PA
OS493_012144-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_012145-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_012146-T1DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
OS493_012147-T1DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
OS493_012148-T1
OS493_012149-T1
OS493_012150-T1
OS493_012151-T1NUCLEAR RECEPTOR BINDING FACTOR 2
OS493_012152-T1TRYPSIN-RELATED
OS493_012153-T1PROPERDIN
OS493_012154-T1RING FINGER PROTEIN 37
OS493_012155-T1F-BOX ONLY PROTEIN 22
OS493_012156-T1
OS493_012157-T1
OS493_012158-T1
OS493_012159-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_012160-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_012162-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
OS493_012163-T1ATP-DEPENDENT RNA HELICASE RHLE-RELATED
OS493_012165-T1ALPHA-L-FUCOSIDASE
OS493_012167-T1ES1 PROTEIN HOMOLOG, MITOCHONDRIAL
OS493_012168-T1ABRAXAS FAMILY MEMBER
OS493_012169-T1GRANULIN
OS493_012170-T1GRANULIN
OS493_012171-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
OS493_012172-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
OS493_012174-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
OS493_012175-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
OS493_012176-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
OS493_012177-T1
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