About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_012070-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_012071-T1SPECKLE-TYPE POZ PROTEIN
OS493_012072-T1RHO FAMILY GTPASE
OS493_012073-T1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
OS493_012074-T1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
OS493_012075-T1
OS493_012076-T1TRANSMEMBRANE PROTEIN 128
OS493_012077-T1JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN
OS493_012078-T1
OS493_012079-T1
OS493_012080-T1
OS493_012081-T1
OS493_012083-T1PROTEIN FOLDING REGULATOR
OS493_012084-T1PROTEIN FOLDING REGULATOR
OS493_012085-T1
OS493_012086-T1
OS493_012087-T1CONDENSIN COMPLEX SUBUNIT 3-RELATED
OS493_012088-T1CONDENSIN COMPLEX SUBUNIT 3-RELATED
OS493_012089-T1UNCHARACTERIZED
OS493_012090-T1COMPLEXIN
OS493_012091-T1GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
OS493_012092-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_012093-T1
OS493_012094-T1
OS493_012095-T1C-REACTIVE PROTEIN-RELATED
OS493_012096-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_012097-T1
OS493_012098-T1MOLTING PROTEIN MLT-4
OS493_012099-T1ANKYRIN REPEAT FAMILY PROTEIN
OS493_012100-T1ANKYRIN REPEAT-CONTAINING
OS493_012101-T1OPSIN
OS493_012102-T1OPSIN
OS493_012103-T1SOLUTE CARRIER FAMILY 17
OS493_012104-T1SOLUTE CARRIER FAMILY 17
OS493_012105-T1
OS493_012107-T1ARSENITE METHYLTRANSFERASE
OS493_012108-T1
OS493_012109-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_012110-T1LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1
OS493_012111-T1LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1
OS493_012112-T1
OS493_012113-T1TRANSCRIPTION FACTOR COE FAMILY MEMBER
OS493_012114-T1TRANSCRIPTION FACTOR COE FAMILY MEMBER
OS493_012115-T1SIGNAL RECOGNITION PARTICLE 72
OS493_012116-T1ACTIVATOR OF S-PHASE KINASE-RELATED
OS493_012117-T1DEOXYCYTIDYLATE DEAMINASE-RELATED
OS493_012118-T1HOMEOBOX PROTEIN EMX-RELATED
OS493_012119-T1-
OS493_012120-T1
OS493_012121-T1V-TYPE PROTON ATPASE SUBUNIT B
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