Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_012070-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
OS493_012071-T1 | SPECKLE-TYPE POZ PROTEIN |
OS493_012072-T1 | RHO FAMILY GTPASE |
OS493_012073-T1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
OS493_012074-T1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
OS493_012075-T1 | |
OS493_012076-T1 | TRANSMEMBRANE PROTEIN 128 |
OS493_012077-T1 | JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN |
OS493_012078-T1 | |
OS493_012079-T1 | |
OS493_012080-T1 | |
OS493_012081-T1 | |
OS493_012083-T1 | PROTEIN FOLDING REGULATOR |
OS493_012084-T1 | PROTEIN FOLDING REGULATOR |
OS493_012085-T1 | |
OS493_012086-T1 | |
OS493_012087-T1 | CONDENSIN COMPLEX SUBUNIT 3-RELATED |
OS493_012088-T1 | CONDENSIN COMPLEX SUBUNIT 3-RELATED |
OS493_012089-T1 | UNCHARACTERIZED |
OS493_012090-T1 | COMPLEXIN |
OS493_012091-T1 | GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE |
OS493_012092-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_012093-T1 | |
OS493_012094-T1 | |
OS493_012095-T1 | C-REACTIVE PROTEIN-RELATED |
OS493_012096-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_012097-T1 | |
OS493_012098-T1 | MOLTING PROTEIN MLT-4 |
OS493_012099-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
OS493_012100-T1 | ANKYRIN REPEAT-CONTAINING |
OS493_012101-T1 | OPSIN |
OS493_012102-T1 | OPSIN |
OS493_012103-T1 | SOLUTE CARRIER FAMILY 17 |
OS493_012104-T1 | SOLUTE CARRIER FAMILY 17 |
OS493_012105-T1 | |
OS493_012107-T1 | ARSENITE METHYLTRANSFERASE |
OS493_012108-T1 | |
OS493_012109-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_012110-T1 | LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1 |
OS493_012111-T1 | LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1 |
OS493_012112-T1 | |
OS493_012113-T1 | TRANSCRIPTION FACTOR COE FAMILY MEMBER |
OS493_012114-T1 | TRANSCRIPTION FACTOR COE FAMILY MEMBER |
OS493_012115-T1 | SIGNAL RECOGNITION PARTICLE 72 |
OS493_012116-T1 | ACTIVATOR OF S-PHASE KINASE-RELATED |
OS493_012117-T1 | DEOXYCYTIDYLATE DEAMINASE-RELATED |
OS493_012118-T1 | HOMEOBOX PROTEIN EMX-RELATED |
OS493_012119-T1 | - |
OS493_012120-T1 | |
OS493_012121-T1 | V-TYPE PROTON ATPASE SUBUNIT B |