Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_011327-T1 | TTC17 PROTEIN |
OS493_011328-T1 | TTC17 PROTEIN |
OS493_011329-T1 | LIPASE MATURATION FACTOR |
OS493_011330-T1 | LIPASE MATURATION FACTOR |
OS493_011331-T1 | LIPASE MATURATION FACTOR |
OS493_011332-T1 | CONDENSIN-2 COMPLEX SUBUNIT H2 |
OS493_011333-T1 | |
OS493_011334-T1 | ARL14 EFFECTOR PROTEIN |
OS493_011335-T1 | 40S RIBOSOMAL PROTEIN S10 |
OS493_011336-T1 | WD REPEAT-CONTAINING PROTEIN 55 |
OS493_011337-T1 | |
OS493_011338-T1 | APOPTOTIC PROTEASE-ACTIVATING FACTOR 1 |
OS493_011339-T1 | APOPTOTIC PROTEASE-ACTIVATING FACTOR 1 |
OS493_011340-T1 | |
OS493_011341-T1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
OS493_011342-T1 | BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATED |
OS493_011343-T1 | BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATED |
OS493_011344-T1 | BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATED |
OS493_011345-T1 | GROWTH HORMONE-INDUCIBLE SOLUBLE PROTEIN-RELATED |
OS493_011346-T1 | THYMIDYLATE SYNTHASE 1 |
OS493_011347-T1 | |
OS493_011348-T1 | |
OS493_011349-T1 | |
OS493_011350-T1 | CYTOCHROME P450 FAMILY 4 |
OS493_011351-T1 | |
OS493_011352-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_011353-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_011354-T1 | TETRASPANIN |
OS493_011355-T1 | CHONDROITIN SYNTHASE |
OS493_011356-T1 | |
OS493_011357-T1 | CENTROSOMAL PROTEIN 2 |
OS493_011358-T1 | |
OS493_011359-T1 | ANION EXCHANGE PROTEIN |
OS493_011360-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
OS493_011361-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
OS493_011362-T1 | |
OS493_011363-T1 | ADIPOR/PROGESTIN RECEPTOR-RELATED |
OS493_011364-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_011365-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 |
OS493_011366-T1 | MYOTUBULARIN-RELATED |
OS493_011367-T1 | MEVALONATE KINASE/GALACTOKINASE |
OS493_011368-T1 | MEVALONATE KINASE/GALACTOKINASE |
OS493_011369-T1 | LD11652P |
OS493_011370-T1 | RRP15-LIKE PROTEIN |
OS493_011371-T1 | GH04784P |
OS493_011372-T1 | GH04784P |
OS493_011373-T1 | |
OS493_011374-T1 | TETRASPANIN |
OS493_011375-T1 | |
OS493_011376-T1 | CHONDROITIN SYNTHASE |