About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_011060-T1FAT ATYPICAL CADHERIN-RELATED
OS493_011061-T1
OS493_011062-T1
OS493_011063-T1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
OS493_011064-T1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
OS493_011065-T1
OS493_011067-T1CYCLINS
OS493_011069-T13-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
OS493_011070-T1
OS493_011071-T1
OS493_011072-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_011073-T1
OS493_011074-T1SORTING NEXIN-29-RELATED
OS493_011075-T1SORTING NEXIN-29-RELATED
OS493_011077-T1
OS493_011078-T1SORTING NEXIN-29-RELATED
OS493_011079-T1CALCIUM-REGULATED HEAT STABLE PROTEIN CRHSP-24-RELATED
OS493_011080-T1GLYCOPROTEIN HORMONE RECEPTOR
OS493_011082-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_011083-T1XYLOSYLTRANSFERASE OXT
OS493_011084-T1XYLOSYLTRANSFERASE OXT
OS493_011085-T1
OS493_011086-T1LIN-9
OS493_011087-T1P2X PURINOCEPTOR
OS493_011088-T1
OS493_011089-T1CYTOSOLIC CARBOXYPEPTIDASE
OS493_011090-T1CYTOSOLIC CARBOXYPEPTIDASE
OS493_011092-T1
OS493_011093-T1
OS493_011094-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 61
OS493_011095-T1ANKYRIN REPEAT CONTAINING
OS493_011096-T1MYOTROPHIN
OS493_011097-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
OS493_011098-T1
OS493_011099-T1
OS493_011100-T1SI:CH211-243P7.3-RELATED
OS493_011101-T1
OS493_011102-T1TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS
OS493_011103-T1ZINC FINGER PROTEIN ZIC AND GLI
OS493_011106-T1
OS493_011107-T1
OS493_011108-T1
OS493_011109-T1
OS493_011110-T1
OS493_011111-T1
OS493_011112-T1
OS493_011113-T1
OS493_011114-T1
OS493_011115-T1ZINC FINGER PROTEIN ZIC AND GLI
OS493_011117-T1JUN TRANSCRIPTION FACTOR-RELATED
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