Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_010898-T1 | SACSIN |
OS493_010899-T1 | ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN |
OS493_010900-T1 | SACSIN |
OS493_010901-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 13 |
OS493_010902-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 13 |
OS493_010903-T1 | PROTEIN CBG16200 |
OS493_010904-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_010905-T1 | CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED |
OS493_010906-T1 | CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED |
OS493_010907-T1 | |
OS493_010908-T1 | OS02G0815200 PROTEIN |
OS493_010910-T1 | |
OS493_010911-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_010912-T1 | |
OS493_010913-T1 | CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED |
OS493_010914-T1 | SERINE/THREONINE-PROTEIN KINASE NEK |
OS493_010915-T1 | |
OS493_010916-T1 | INTEGRIN BETA SUBUNIT |
OS493_010917-T1 | INTEGRIN BETA SUBUNIT |
OS493_010918-T1 | |
OS493_010919-T1 | GUANYLATE BINDING PROTEIN |
OS493_010921-T1 | |
OS493_010922-T1 | GUANYLATE BINDING PROTEIN |
OS493_010923-T1 | GUANYLATE BINDING PROTEIN |
OS493_010924-T1 | |
OS493_010925-T1 | |
OS493_010926-T1 | GUANYLATE BINDING PROTEIN |
OS493_010928-T1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
OS493_010929-T1 | |
OS493_010930-T1 | |
OS493_010931-T1 | |
OS493_010932-T1 | |
OS493_010933-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_010934-T1 | |
OS493_010936-T1 | |
OS493_010937-T1 | |
OS493_010938-T1 | DNAJ HOMOLOG SUBFAMILY B MEMBER 2 |
OS493_010939-T1 | |
OS493_010940-T1 | HISTONE DEACETYLASE HDAC1-RELATED |
OS493_010941-T1 | |
OS493_010942-T1 | IA-2 PROTEIN TYROSINE PHOSPHATASE, ISOFORM C |
OS493_010943-T1 | |
OS493_010944-T1 | RAC GTPASE-ACTIVATING PROTEIN 1 |
OS493_010945-T1 | |
OS493_010946-T1 | |
OS493_010947-T1 | RING BOX |
OS493_010948-T1 | FRATAXIN |
OS493_010949-T1 | 8-OXO-DGTP DIPHOSPHATES NUDT15 |
OS493_010950-T1 | DYNEIN ASSEMBLY FACTOR 4, AXONEMAL |
OS493_010951-T1 | CELL DIVISION PROTEIN KINASE |