About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_010898-T1SACSIN
OS493_010899-T1ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
OS493_010900-T1SACSIN
OS493_010901-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 13
OS493_010902-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 13
OS493_010903-T1PROTEIN CBG16200
OS493_010904-T1G PROTEIN-COUPLED RECEPTOR
OS493_010905-T1CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED
OS493_010906-T1CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED
OS493_010907-T1
OS493_010908-T1OS02G0815200 PROTEIN
OS493_010910-T1
OS493_010911-T1G PROTEIN-COUPLED RECEPTOR
OS493_010912-T1
OS493_010913-T1CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED
OS493_010914-T1SERINE/THREONINE-PROTEIN KINASE NEK
OS493_010915-T1
OS493_010916-T1INTEGRIN BETA SUBUNIT
OS493_010917-T1INTEGRIN BETA SUBUNIT
OS493_010918-T1
OS493_010919-T1GUANYLATE BINDING PROTEIN
OS493_010921-T1
OS493_010922-T1GUANYLATE BINDING PROTEIN
OS493_010923-T1GUANYLATE BINDING PROTEIN
OS493_010924-T1
OS493_010925-T1
OS493_010926-T1GUANYLATE BINDING PROTEIN
OS493_010928-T1PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE
OS493_010929-T1
OS493_010930-T1
OS493_010931-T1
OS493_010932-T1
OS493_010933-T1G-PROTEIN COUPLED RECEPTOR
OS493_010934-T1
OS493_010936-T1
OS493_010937-T1
OS493_010938-T1DNAJ HOMOLOG SUBFAMILY B MEMBER 2
OS493_010939-T1
OS493_010940-T1HISTONE DEACETYLASE HDAC1-RELATED
OS493_010941-T1
OS493_010942-T1IA-2 PROTEIN TYROSINE PHOSPHATASE, ISOFORM C
OS493_010943-T1
OS493_010944-T1RAC GTPASE-ACTIVATING PROTEIN 1
OS493_010945-T1
OS493_010946-T1
OS493_010947-T1RING BOX
OS493_010948-T1FRATAXIN
OS493_010949-T18-OXO-DGTP DIPHOSPHATES NUDT15
OS493_010950-T1DYNEIN ASSEMBLY FACTOR 4, AXONEMAL
OS493_010951-T1CELL DIVISION PROTEIN KINASE
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