Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_010685-T1 | COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN |
OS493_010686-T1 | UNCHARACTERIZED |
OS493_010687-T1 | SI:ZFOS-911D5.4 |
OS493_010688-T1 | ATP-DEPENDENT RNA HELICASE DBP3 |
OS493_010689-T1 | OS02G0202900 PROTEIN |
OS493_010690-T1 | DNA POLYMERASE DELTA SUBUNIT 2 |
OS493_010692-T1 | DNA POLYMERASE DELTA SUBUNIT 2 |
OS493_010693-T1 | |
OS493_010694-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_010695-T1 | BETA LACTAMASE DOMAIN |
OS493_010696-T1 | |
OS493_010697-T1 | BETA LACTAMASE DOMAIN |
OS493_010698-T1 | TRANSCRIPTION INITIATION FACTOR IA RRN3 |
OS493_010699-T1 | REGULATOR OF MICROTUBULE DYNAMICS PROTEIN |
OS493_010700-T1 | FORKHEAD BOX PROTEIN J1 |
OS493_010701-T1 | WD40 REPEAT PF20 |
OS493_010702-T1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
OS493_010703-T1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
OS493_010704-T1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
OS493_010705-T1 | THIOPURINE S-METHYLTRANSFERASE |
OS493_010706-T1 | |
OS493_010707-T1 | RIBOSOME BIOGENESIS REGULATORY PROTEIN |
OS493_010708-T1 | |
OS493_010709-T1 | ZINC FINGER PROTEIN |
OS493_010710-T1 | SEPTIN |
OS493_010711-T1 | |
OS493_010712-T1 | |
OS493_010713-T1 | EXPRESSED PROTEIN |
OS493_010715-T1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
OS493_010716-T1 | DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] |
OS493_010717-T1 | THO COMPLEX SUBUNIT 1 |
OS493_010718-T1 | |
OS493_010720-T1 | |
OS493_010721-T1 | |
OS493_010722-T1 | |
OS493_010723-T1 | THO COMPLEX SUBUNIT 1 |
OS493_010725-T1 | |
OS493_010726-T1 | |
OS493_010727-T1 | |
OS493_010728-T1 | |
OS493_010729-T1 | |
OS493_010730-T1 | |
OS493_010731-T1 | |
OS493_010732-T1 | |
OS493_010735-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_010736-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
OS493_010737-T1 | KREMEN PROTEIN |
OS493_010738-T1 | GLYCOSYL HYDROLASE |
OS493_010739-T1 | |
OS493_010743-T1 |