About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004119-T1COILED-COIL DOMAIN-CONTAINING 74A
OS493_004120-T1PRE-MRNA-PROCESSING FACTOR 19
OS493_004121-T1RETINAL PROTEIN 4
OS493_004122-T1PHD FINGER PROTEIN 12
OS493_004123-T1PHD FINGER PROTEIN 12
OS493_004124-T1THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
OS493_004125-T1-
OS493_004126-T1EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED
OS493_004127-T1OXYSTEROL-BINDING PROTEIN-RELATED
OS493_004128-T1LD44762P
OS493_004129-T1SEL-1-LIKE PROTEIN
OS493_004130-T1HOST CELL FACTOR C1 REGULATOR 1
OS493_004131-T1MITOTIC-SPINDLE ORGANIZING PROTEIN 2A-RELATED
OS493_004132-T1RAS GTPASE-ACTIVATING PROTEINS
OS493_004133-T1RAS GTPASE-ACTIVATING PROTEINS
OS493_004134-T1RAS GTPASE-ACTIVATING PROTEINS
OS493_004135-T1SNF5
OS493_004136-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
OS493_004137-T1-
OS493_004138-T1-
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