Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_010313-T1 | ALKALINE CERAMIDASE 3 |
OS493_010314-T1 | 26S PROTEASOME REGULATORY SUBUNIT |
OS493_010315-T1 | |
OS493_010316-T1 | DISCS LARGE |
OS493_010317-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4 |
OS493_010318-T1 | TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR |
OS493_010319-T1 | |
OS493_010320-T1 | |
OS493_010321-T1 | 60S RIBOSOMAL PROTEIN L35A |
OS493_010322-T1 | |
OS493_010323-T1 | |
OS493_010324-T1 | CENTROSOMAL PROTEIN 2 |
OS493_010325-T1 | ANGIOTENSIN-CONVERTING ENZYME |
OS493_010326-T1 | ANGIOTENSIN-CONVERTING ENZYME |
OS493_010327-T1 | ZINC FINGER PROTEIN ZIC AND GLI |
OS493_010328-T1 | CYSTEINE PROTEASE ATG4 |
OS493_010329-T1 | |
OS493_010330-T1 | |
OS493_010331-T1 | |
OS493_010332-T1 | |
OS493_010333-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 17 |
OS493_010334-T1 | |
OS493_010335-T1 | GLYCOGEN SYNTHASE KINASE-3 ALPHA |
OS493_010336-T1 | DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 |
OS493_010337-T1 | FOLLISTATIN-RELATED |
OS493_010338-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_010339-T1 | COILIN |
OS493_010340-T1 | TRANSMEMBRANE PROTEIN 232 |
OS493_010341-T1 | TRANSMEMBRANE PROTEIN 232 |
OS493_010342-T1 | ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 1 |
OS493_010343-T1 | SULFOTRANSFERASE DOMAIN-CONTAINING PROTEIN |
OS493_010344-T1 | SULFOTRANSFERASE DOMAIN-CONTAINING PROTEIN |
OS493_010345-T1 | KNIRPS-RELATED PROTEIN-RELATED |
OS493_010346-T1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
OS493_010347-T1 | F-BOX ONLY PROTEIN 3 |
OS493_010348-T1 | - |
OS493_010349-T1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
OS493_010350-T1 | PROTEIN SIDEKICK |
OS493_010351-T1 | |
OS493_010352-T1 | |
OS493_010353-T1 | |
OS493_010354-T1 | |
OS493_010355-T1 | |
OS493_010356-T1 | COILIN |
OS493_010358-T1 | ARRESTIN |
OS493_010359-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_010360-T1 | |
OS493_010362-T1 | |
OS493_010363-T1 | TRANSMEMBRANE PROTEIN 151 HOMOLOG |
OS493_010364-T1 | BONUS, ISOFORM C-RELATED |