About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_010313-T1ALKALINE CERAMIDASE 3
OS493_010314-T126S PROTEASOME REGULATORY SUBUNIT
OS493_010315-T1
OS493_010316-T1DISCS LARGE
OS493_010317-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4
OS493_010318-T1TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR
OS493_010319-T1
OS493_010320-T1
OS493_010321-T160S RIBOSOMAL PROTEIN L35A
OS493_010322-T1
OS493_010323-T1
OS493_010324-T1CENTROSOMAL PROTEIN 2
OS493_010325-T1ANGIOTENSIN-CONVERTING ENZYME
OS493_010326-T1ANGIOTENSIN-CONVERTING ENZYME
OS493_010327-T1ZINC FINGER PROTEIN ZIC AND GLI
OS493_010328-T1CYSTEINE PROTEASE ATG4
OS493_010329-T1
OS493_010330-T1
OS493_010331-T1
OS493_010332-T1
OS493_010333-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 17
OS493_010334-T1
OS493_010335-T1GLYCOGEN SYNTHASE KINASE-3 ALPHA
OS493_010336-T1DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11
OS493_010337-T1FOLLISTATIN-RELATED
OS493_010338-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_010339-T1COILIN
OS493_010340-T1TRANSMEMBRANE PROTEIN 232
OS493_010341-T1TRANSMEMBRANE PROTEIN 232
OS493_010342-T1ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 1
OS493_010343-T1SULFOTRANSFERASE DOMAIN-CONTAINING PROTEIN
OS493_010344-T1SULFOTRANSFERASE DOMAIN-CONTAINING PROTEIN
OS493_010345-T1KNIRPS-RELATED PROTEIN-RELATED
OS493_010346-T1DEAD-BOX ATP-DEPENDENT RNA HELICASE 50
OS493_010347-T1F-BOX ONLY PROTEIN 3
OS493_010348-T1-
OS493_010349-T1SID1 TRANSMEMBRANE FAMILY MEMEBER
OS493_010350-T1PROTEIN SIDEKICK
OS493_010351-T1
OS493_010352-T1
OS493_010353-T1
OS493_010354-T1
OS493_010355-T1
OS493_010356-T1COILIN
OS493_010358-T1ARRESTIN
OS493_010359-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_010360-T1
OS493_010362-T1
OS493_010363-T1TRANSMEMBRANE PROTEIN 151 HOMOLOG
OS493_010364-T1BONUS, ISOFORM C-RELATED
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