About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_010101-T1RAS-RELATED PROTEIN RAB
OS493_010102-T1DRAB11-RELATED
OS493_010103-T1MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN
OS493_010104-T1PEPTIDASE M20
OS493_010105-T1PEPTIDASE M20
OS493_010106-T1PEPTIDASE M20
OS493_010107-T1PEPTIDASE M20
OS493_010108-T1SCAVENGER RECEPTOR CLASS F
OS493_010109-T1SCAVENGER RECEPTOR CLASS F
OS493_010110-T1MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN
OS493_010111-T1SCAVENGER RECEPTOR CLASS F
OS493_010112-T1LEUCINE ZIPPER PROTEIN 4-RELATED
OS493_010113-T1
OS493_010114-T1
OS493_010115-T1
OS493_010116-T1
OS493_010117-T1
OS493_010118-T1ATF6, ISOFORM C
OS493_010119-T1ATF6, ISOFORM C
OS493_010120-T1TRANSFERRIN
OS493_010121-T1TRANSFERRIN
OS493_010122-T1
OS493_010123-T1LEUCINE ZIPPER PROTEIN 4-RELATED
OS493_010124-T1
OS493_010125-T1
OS493_010126-T1
OS493_010127-T1
OS493_010128-T1E3 UBIQUITIN-PROTEIN LIGASE RNF26
OS493_010129-T1-
OS493_010130-T1SURFEIT LOCUS PROTEIN
OS493_010131-T1UNCHARACTERIZED
OS493_010132-T1UNCHARACTERIZED
OS493_010133-T1POLY [ADP-RIBOSE] POLYMERASE
OS493_010134-T1POLY [ADP-RIBOSE] POLYMERASE
OS493_010135-T1POLY [ADP-RIBOSE] POLYMERASE
OS493_010136-T1POLY [ADP-RIBOSE] POLYMERASE
OS493_010137-T1POLY [ADP-RIBOSE] POLYMERASE
OS493_010138-T1TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED
OS493_010139-T1POLY [ADP-RIBOSE] POLYMERASE
OS493_010140-T1TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED
OS493_010141-T1
OS493_010142-T1
OS493_010143-T1DYNEIN LIGHT INTERMEDIATE CHAIN
OS493_010144-T1PROTEIN EVA-1
OS493_010145-T1COLLAGEN
OS493_010146-T1PROTEIN EVA-1
OS493_010147-T1
OS493_010148-T1
OS493_010149-T1
OS493_010150-T1
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