Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_009844-T1 | CALPONIN |
OS493_009845-T1 | CALPONIN |
OS493_009846-T1 | |
OS493_009847-T1 | CALPONIN |
OS493_009848-T1 | CALPONIN |
OS493_009849-T1 | NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4 |
OS493_009850-T1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
OS493_009851-T1 | ARMADILLO REPEAT CONTAINING 2 |
OS493_009852-T1 | ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4 |
OS493_009853-T1 | SORBITOL DEHYDROGENASE |
OS493_009854-T1 | PROTEASOME ASSEMBLY CHAPERONE 1 |
OS493_009855-T1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
OS493_009856-T1 | SERINE-THREONINE PROTEIN KINASE |
OS493_009857-T1 | |
OS493_009858-T1 | |
OS493_009859-T1 | |
OS493_009860-T1 | |
OS493_009861-T1 | |
OS493_009862-T1 | ANDROGLOBIN |
OS493_009863-T1 | ANDROGLOBIN |
OS493_009864-T1 | 5'-NUCLEOTIDASE-RELATED |
OS493_009865-T1 | WD40 REPEAT FAMILY |
OS493_009866-T1 | RIBOSOMAL PROTEIN S6 KINASE |
OS493_009867-T1 | RIBOSOMAL PROTEIN S6 KINASE |
OS493_009868-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
OS493_009869-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
OS493_009870-T1 | |
OS493_009871-T1 | |
OS493_009872-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
OS493_009873-T1 | |
OS493_009874-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
OS493_009875-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_009876-T1 | GABA-B RECEPTOR |
OS493_009877-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_009878-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_009879-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_009880-T1 | GABA-B RECEPTOR |
OS493_009881-T1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
OS493_009882-T1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
OS493_009883-T1 | LANC-LIKE PROTEIN |
OS493_009884-T1 | |
OS493_009885-T1 | |
OS493_009886-T1 | |
OS493_009887-T1 | |
OS493_009888-T1 | |
OS493_009889-T1 | SI:CH211-266K2.1 |
OS493_009890-T1 | F-BOX FAMILY PROTEIN |
OS493_009891-T1 | F-BOX FAMILY PROTEIN |
OS493_009892-T1 | SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1 |
OS493_009893-T1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |