About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_009741-T1
OS493_009742-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_009743-T1
OS493_009744-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_009745-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_009746-T1
OS493_009747-T1LEUCOKININ RECEPTOR-RELATED
OS493_009748-T1T-BOX PROTEIN-RELATED
OS493_009749-T1
OS493_009750-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_009751-T1
OS493_009752-T1UNCHARACTERIZED
OS493_009753-T1UNCHARACTERIZED
OS493_009754-T1
OS493_009755-T1DUF914-RELATED
OS493_009756-T1DRAB11-RELATED
OS493_009757-T1PROTEIN SON
OS493_009758-T1PROTEIN SON
OS493_009759-T1UNCHARACTERIZED
OS493_009760-T1INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 1-BINDING PROTEIN 1
OS493_009761-T1ALPHA-L-FUCOSIDASE
OS493_009762-T1
OS493_009764-T1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG
OS493_009765-T1PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED
OS493_009767-T1INTELECTIN
OS493_009768-T1INTELECTIN
OS493_009769-T1
OS493_009770-T1F-BOX ONLY PROTEIN 6-LIKE PROTEIN
OS493_009771-T1DNA INTERNALIZATION/COMPETENCE PROTEIN COMEC/REC2
OS493_009772-T1
OS493_009773-T1
OS493_009774-T1NOTCH LIGAND FAMILY MEMBER
OS493_009775-T1
OS493_009776-T1ALKALINE PHOSPHATASE
OS493_009777-T1
OS493_009778-T1
OS493_009779-T1ALKALINE PHOSPHATASE
OS493_009780-T1ALKALINE PHOSPHATASE
OS493_009781-T1
OS493_009782-T1OLFACTOMEDIN-RELATED
OS493_009783-T1OLFACTOMEDIN-RELATED
OS493_009784-T1OLFACTOMEDIN-RELATED
OS493_009785-T1
OS493_009786-T1
OS493_009787-T1OLFACTOMEDIN-RELATED
OS493_009788-T1METHYLTRANSFERASE
OS493_009789-T1UNCHARACTERIZED
OS493_009790-T1ATP-BINDING CASSETTE SUB-FAMILY B
OS493_009791-T1POTE ANKYRIN DOMAIN
OS493_009792-T1TETRASPANIN
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