About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_009474-T1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
OS493_009475-T1E3 UBIQUITIN-PROTEIN LIGASE HECTD3
OS493_009476-T1
OS493_009477-T1E3 UBIQUITIN-PROTEIN LIGASE HECTD3
OS493_009478-T1
OS493_009479-T1SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG
OS493_009480-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_009481-T1
OS493_009482-T1
OS493_009483-T1BCS1 AAA-TYPE ATPASE
OS493_009484-T1OXIDASE/PEROXIDASE
OS493_009485-T1OXIDASE/PEROXIDASE
OS493_009487-T1OXIDASE/PEROXIDASE
OS493_009488-T1OXIDASE/PEROXIDASE
OS493_009490-T1OXIDASE/PEROXIDASE
OS493_009492-T1
OS493_009493-T1OXIDASE/PEROXIDASE
OS493_009494-T1OXIDASE/PEROXIDASE
OS493_009495-T1OXIDASE/PEROXIDASE
OS493_009496-T1OXIDASE/PEROXIDASE
OS493_009498-T1
OS493_009499-T1TRANSMEMBRANE PROTEIN 68
OS493_009500-T1
OS493_009502-T1CYTOCHROME C OXIDASE SUBUNIT 6C
OS493_009503-T1ADDITIONAL SEX COMBS LIKE PROTEIN ASXL
OS493_009504-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
OS493_009505-T1EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1
OS493_009506-T1TETRASPANIN
OS493_009507-T1HISTONE ACETYLTRANSFERASE
OS493_009508-T1MONOCARBOXYLATE TRANSPORTER
OS493_009509-T1
OS493_009510-T1MONOCARBOXYLATE TRANSPORTER
OS493_009511-T1MONOCARBOXYLATE TRANSPORTER
OS493_009512-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_009513-T1TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
OS493_009514-T1REGULATOR OF G PROTEIN SIGNALING
OS493_009515-T1CRUMBS FAMILY MEMBER
OS493_009516-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_009517-T1LEUCOKININ RECEPTOR-RELATED
OS493_009518-T1LEUCOKININ RECEPTOR-RELATED
OS493_009519-T1LEUCOKININ RECEPTOR-RELATED
OS493_009521-T1G-PROTEIN COUPLED RECEPTOR
OS493_009522-T1LEUCOKININ RECEPTOR-RELATED
OS493_009523-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_009524-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_009526-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_009527-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_009528-T1
OS493_009529-T1
OS493_009530-T1OXIDASE/PEROXIDASE
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