About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_009211-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
OS493_009212-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_009213-T1FERREDOXIN-RELATED
OS493_009214-T1ATP-DEPENDENT RNA HELICASE
OS493_009215-T1CYTOSOLIC CARBOXYPEPTIDASE
OS493_009216-T1CYTOSOLIC CARBOXYPEPTIDASE
OS493_009217-T1
OS493_009218-T1REGULATORY PROTEIN ZESTE
OS493_009219-T1REGULATORY PROTEIN ZESTE
OS493_009220-T1
OS493_009221-T1REGULATORY PROTEIN ZESTE
OS493_009222-T1-
OS493_009223-T1-
OS493_009224-T1WD-REPEAT PROTEIN
OS493_009225-T1
OS493_009226-T1WD-REPEAT PROTEIN
OS493_009227-T1
OS493_009228-T1GTP-BINDING PROTEIN-RELATED
OS493_009229-T1INTELECTIN
OS493_009231-T1OXIDASE/PEROXIDASE
OS493_009232-T1OXIDASE/PEROXIDASE
OS493_009233-T1G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
OS493_009234-T1VALACYCLOVIR HYDROLASE
OS493_009235-T1
OS493_009236-T1PENTRAXIN
OS493_009237-T1
OS493_009238-T1TGF-BETA FAMILY
OS493_009239-T1CYTOSOLIC PHOSPHOLIPASE A2
OS493_009240-T1CYTOSOLIC PHOSPHOLIPASE A2
OS493_009241-T1CYTOSOLIC PHOSPHOLIPASE A2
OS493_009242-T1TRANSMEMBRANE PROTEIN 214
OS493_009243-T1TRANSMEMBRANE PROTEIN 214
OS493_009244-T1DEATH DOMAIN-CONTAINING PROTEIN
OS493_009245-T1DEATH DOMAIN-CONTAINING PROTEIN
OS493_009246-T1MYC PROTO-ONCOGENE
OS493_009247-T1UNCHARACTERIZED
OS493_009248-T1UNCHARACTERIZED
OS493_009249-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_009250-T1
OS493_009251-T1
OS493_009252-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_009253-T1PENTRAXIN
OS493_009254-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_009255-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_009256-T1MERLIN/MOESIN/EZRIN/RADIXIN
OS493_009258-T1MITOCHONDRIAL UBIQUITIN LIGASE ACTIVATOR OF NFKB 1
OS493_009260-T1
OS493_009261-T1
OS493_009262-T1
OS493_009263-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
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