Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_009211-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_009212-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
OS493_009213-T1 | FERREDOXIN-RELATED |
OS493_009214-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_009215-T1 | CYTOSOLIC CARBOXYPEPTIDASE |
OS493_009216-T1 | CYTOSOLIC CARBOXYPEPTIDASE |
OS493_009217-T1 | |
OS493_009218-T1 | REGULATORY PROTEIN ZESTE |
OS493_009219-T1 | REGULATORY PROTEIN ZESTE |
OS493_009220-T1 | |
OS493_009221-T1 | REGULATORY PROTEIN ZESTE |
OS493_009222-T1 | - |
OS493_009223-T1 | - |
OS493_009224-T1 | WD-REPEAT PROTEIN |
OS493_009225-T1 | |
OS493_009226-T1 | WD-REPEAT PROTEIN |
OS493_009227-T1 | |
OS493_009228-T1 | GTP-BINDING PROTEIN-RELATED |
OS493_009229-T1 | INTELECTIN |
OS493_009231-T1 | OXIDASE/PEROXIDASE |
OS493_009232-T1 | OXIDASE/PEROXIDASE |
OS493_009233-T1 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
OS493_009234-T1 | VALACYCLOVIR HYDROLASE |
OS493_009235-T1 | |
OS493_009236-T1 | PENTRAXIN |
OS493_009237-T1 | |
OS493_009238-T1 | TGF-BETA FAMILY |
OS493_009239-T1 | CYTOSOLIC PHOSPHOLIPASE A2 |
OS493_009240-T1 | CYTOSOLIC PHOSPHOLIPASE A2 |
OS493_009241-T1 | CYTOSOLIC PHOSPHOLIPASE A2 |
OS493_009242-T1 | TRANSMEMBRANE PROTEIN 214 |
OS493_009243-T1 | TRANSMEMBRANE PROTEIN 214 |
OS493_009244-T1 | DEATH DOMAIN-CONTAINING PROTEIN |
OS493_009245-T1 | DEATH DOMAIN-CONTAINING PROTEIN |
OS493_009246-T1 | MYC PROTO-ONCOGENE |
OS493_009247-T1 | UNCHARACTERIZED |
OS493_009248-T1 | UNCHARACTERIZED |
OS493_009249-T1 | CUB DOMAIN-CONTAINING PROTEIN |
OS493_009250-T1 | |
OS493_009251-T1 | |
OS493_009252-T1 | CUB DOMAIN-CONTAINING PROTEIN |
OS493_009253-T1 | PENTRAXIN |
OS493_009254-T1 | CUB DOMAIN-CONTAINING PROTEIN |
OS493_009255-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_009256-T1 | MERLIN/MOESIN/EZRIN/RADIXIN |
OS493_009258-T1 | MITOCHONDRIAL UBIQUITIN LIGASE ACTIVATOR OF NFKB 1 |
OS493_009260-T1 | |
OS493_009261-T1 | |
OS493_009262-T1 | |
OS493_009263-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |