
Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
| Gene ID | Description |
|---|---|
| OS493_009109-T1 | UNCHARACTERIZED |
| OS493_009110-T1 | |
| OS493_009111-T1 | RIBOSOMAL PROTEIN S6 KINASE |
| OS493_009112-T1 | RIBOSOMAL PROTEIN S6 KINASE |
| OS493_009113-T1 | INTEGRATOR COMPLEX SUBUNIT 2 |
| OS493_009114-T1 | WD REPEAT-CONTAINING PROTEIN POP1 |
| OS493_009115-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER |
| OS493_009116-T1 | |
| OS493_009117-T1 | |
| OS493_009118-T1 | B9 DOMAIN-CONTAINING |
| OS493_009119-T1 | ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE |
| OS493_009120-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| OS493_009121-T1 | LEUCOKININ RECEPTOR-RELATED |
| OS493_009122-T1 | D-XYLOSE-PROTON SYMPORTER-LIKE 2 |
| OS493_009123-T1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| OS493_009124-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| OS493_009125-T1 | |
| OS493_009126-T1 | LYSOSOMAL COBALAMIN TRANSPORTER-RELATED |
| OS493_009127-T1 | LYSOSOMAL COBALAMIN TRANSPORTER-RELATED |
| OS493_009128-T1 | DNA PRIMASE LARGE SUBUNIT |
| OS493_009129-T1 | |
| OS493_009130-T1 | CALCIUM HOMEOSTASIS MODULATOR PROTEIN |
| OS493_009131-T1 | |
| OS493_009132-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| OS493_009133-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| OS493_009134-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| OS493_009135-T1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| OS493_009136-T1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| OS493_009137-T1 | |
| OS493_009138-T1 | |
| OS493_009139-T1 | |
| OS493_009140-T1 | UBIQUITIN LIGASE PROTEIN CHFR |
| OS493_009141-T1 | UNCHARACTERIZED |
| OS493_009142-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 |
| OS493_009143-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 |
| OS493_009144-T1 | |
| OS493_009145-T1 | |
| OS493_009146-T1 | |
| OS493_009147-T1 | |
| OS493_009148-T1 | |
| OS493_009149-T1 | |
| OS493_009150-T1 | RHO-GTPASE-ACTIVATING PROTEIN LRG1 |
| OS493_009151-T1 | |
| OS493_009152-T1 | |
| OS493_009153-T1 | |
| OS493_009154-T1 | SORTILIN RELATED |
| OS493_009155-T1 | SORTILIN RELATED |
| OS493_009156-T1 | CYTOKINE RECEPTOR |
| OS493_009157-T1 | TYROSINE-PROTEIN KINASE |
| OS493_009158-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |