About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_009109-T1UNCHARACTERIZED
OS493_009110-T1
OS493_009111-T1RIBOSOMAL PROTEIN S6 KINASE
OS493_009112-T1RIBOSOMAL PROTEIN S6 KINASE
OS493_009113-T1INTEGRATOR COMPLEX SUBUNIT 2
OS493_009114-T1WD REPEAT-CONTAINING PROTEIN POP1
OS493_009115-T1MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER
OS493_009116-T1
OS493_009117-T1
OS493_009118-T1B9 DOMAIN-CONTAINING
OS493_009119-T1ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
OS493_009120-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_009121-T1LEUCOKININ RECEPTOR-RELATED
OS493_009122-T1D-XYLOSE-PROTON SYMPORTER-LIKE 2
OS493_009123-T1RING-TYPE DOMAIN-CONTAINING PROTEIN
OS493_009124-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_009125-T1
OS493_009126-T1LYSOSOMAL COBALAMIN TRANSPORTER-RELATED
OS493_009127-T1LYSOSOMAL COBALAMIN TRANSPORTER-RELATED
OS493_009128-T1DNA PRIMASE LARGE SUBUNIT
OS493_009129-T1
OS493_009130-T1CALCIUM HOMEOSTASIS MODULATOR PROTEIN
OS493_009131-T1
OS493_009132-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_009133-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_009134-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_009135-T1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
OS493_009136-T1TRANSCRIPTION INITIATION FACTOR TFIID
OS493_009137-T1
OS493_009138-T1
OS493_009139-T1
OS493_009140-T1UBIQUITIN LIGASE PROTEIN CHFR
OS493_009141-T1UNCHARACTERIZED
OS493_009142-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3
OS493_009143-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3
OS493_009144-T1
OS493_009145-T1
OS493_009146-T1
OS493_009147-T1
OS493_009148-T1
OS493_009149-T1
OS493_009150-T1RHO-GTPASE-ACTIVATING PROTEIN LRG1
OS493_009151-T1
OS493_009152-T1
OS493_009153-T1
OS493_009154-T1SORTILIN RELATED
OS493_009155-T1SORTILIN RELATED
OS493_009156-T1CYTOKINE RECEPTOR
OS493_009157-T1TYROSINE-PROTEIN KINASE
OS493_009158-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
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