About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_008894-T1
OS493_008895-T1CARBAMOYLTRANSFERASE FAMILY MEMBER
OS493_008896-T1CARBAMOYLTRANSFERASE FAMILY MEMBER
OS493_008897-T1N-ACETYLGLUTAMATE SYNTHASE
OS493_008898-T1CENTROMERE/KINETOCHORE PROTEIN ZW10
OS493_008899-T1HISTONE-LYSINE N-METHYLTRANSFERASE E(Z)
OS493_008900-T1HISTONE-LYSINE N-METHYLTRANSFERASE E(Z)
OS493_008901-T1TWO PORE CHANNEL 3
OS493_008902-T1TWO PORE CHANNEL 3
OS493_008903-T1UNCHARACTERIZED
OS493_008904-T1UNCHARACTERIZED
OS493_008905-T1MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2
OS493_008906-T1ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4
OS493_008907-T1WHEY ACDIC PROTEIN WAP
OS493_008908-T1
OS493_008909-T1PROTEIN SIDEKICK
OS493_008910-T1
OS493_008911-T1
OS493_008912-T1MULTICOPPER OXIDASE-RELATED
OS493_008913-T1
OS493_008916-T1INHIBITOR OF GROWTH PROTEIN
OS493_008917-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
OS493_008918-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
OS493_008920-T1HELIX LOOP HELIX PROTEIN 21-RELATED
OS493_008921-T1
OS493_008922-T1
OS493_008923-T1NEUROPEPTIDE Y RECEPTOR
OS493_008924-T1EGL NINE HOMOLOG-RELATED
OS493_008925-T1
OS493_008926-T1DNA2/NAM7 HELICASE FAMILY
OS493_008927-T1DNA2/NAM7 HELICASE FAMILY
OS493_008928-T1
OS493_008929-T1
OS493_008930-T1NUCLEOPORIN AMO1-LIKE
OS493_008931-T1DNA2/NAM7 HELICASE FAMILY
OS493_008932-T1DNA2/NAM7 HELICASE FAMILY
OS493_008933-T1
OS493_008934-T1KELCH DOMAIN-CONTAINING PROTEIN 3
OS493_008935-T1
OS493_008936-T1
OS493_008937-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
OS493_008938-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
OS493_008939-T1
OS493_008941-T15-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED
OS493_008942-T1G-PROTEIN COUPLED RECEPTOR
OS493_008943-T1FIBRILLIN-RELATED
OS493_008944-T1SYNAPTOPHYSIN
OS493_008945-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_008946-T1-
OS493_008947-T1CELL DIVISION CYCLE 16,23,27
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