Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_008894-T1 | |
OS493_008895-T1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
OS493_008896-T1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
OS493_008897-T1 | N-ACETYLGLUTAMATE SYNTHASE |
OS493_008898-T1 | CENTROMERE/KINETOCHORE PROTEIN ZW10 |
OS493_008899-T1 | HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) |
OS493_008900-T1 | HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) |
OS493_008901-T1 | TWO PORE CHANNEL 3 |
OS493_008902-T1 | TWO PORE CHANNEL 3 |
OS493_008903-T1 | UNCHARACTERIZED |
OS493_008904-T1 | UNCHARACTERIZED |
OS493_008905-T1 | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 |
OS493_008906-T1 | ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 |
OS493_008907-T1 | WHEY ACDIC PROTEIN WAP |
OS493_008908-T1 | |
OS493_008909-T1 | PROTEIN SIDEKICK |
OS493_008910-T1 | |
OS493_008911-T1 | |
OS493_008912-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_008913-T1 | |
OS493_008916-T1 | INHIBITOR OF GROWTH PROTEIN |
OS493_008917-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
OS493_008918-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
OS493_008920-T1 | HELIX LOOP HELIX PROTEIN 21-RELATED |
OS493_008921-T1 | |
OS493_008922-T1 | |
OS493_008923-T1 | NEUROPEPTIDE Y RECEPTOR |
OS493_008924-T1 | EGL NINE HOMOLOG-RELATED |
OS493_008925-T1 | |
OS493_008926-T1 | DNA2/NAM7 HELICASE FAMILY |
OS493_008927-T1 | DNA2/NAM7 HELICASE FAMILY |
OS493_008928-T1 | |
OS493_008929-T1 | |
OS493_008930-T1 | NUCLEOPORIN AMO1-LIKE |
OS493_008931-T1 | DNA2/NAM7 HELICASE FAMILY |
OS493_008932-T1 | DNA2/NAM7 HELICASE FAMILY |
OS493_008933-T1 | |
OS493_008934-T1 | KELCH DOMAIN-CONTAINING PROTEIN 3 |
OS493_008935-T1 | |
OS493_008936-T1 | |
OS493_008937-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
OS493_008938-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
OS493_008939-T1 | |
OS493_008941-T1 | 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED |
OS493_008942-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_008943-T1 | FIBRILLIN-RELATED |
OS493_008944-T1 | SYNAPTOPHYSIN |
OS493_008945-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_008946-T1 | - |
OS493_008947-T1 | CELL DIVISION CYCLE 16,23,27 |