About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_008562-T1FORKHEAD BOX PROTEIN
OS493_008563-T1N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
OS493_008564-T1SOLUTE CARRIER FAMILY 35
OS493_008565-T1FORKHEAD BOX PROTEIN
OS493_008566-T1
OS493_008567-T1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
OS493_008568-T1SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG
OS493_008569-T1SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG
OS493_008570-T1
OS493_008571-T1AMINE OXIDASE
OS493_008572-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_008573-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_008574-T1CT120 PROTEIN
OS493_008575-T1GLYCOSYL TRANSFERASE-RELATED
OS493_008577-T1KELCH PROTEIN
OS493_008578-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_008579-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_008580-T1LD33695P
OS493_008581-T1HIGH MOBILITY GROUP PROTEIN DSP1
OS493_008582-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
OS493_008583-T1KN MOTIF AND ANKYRIN REPEAT DOMAIN-CONTAINING
OS493_008584-T1
OS493_008585-T1KN MOTIF AND ANKYRIN REPEAT DOMAIN-CONTAINING
OS493_008586-T1FAS-ASSOCIATED PROTEIN
OS493_008587-T1
OS493_008588-T1
OS493_008589-T1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
OS493_008590-T1INTELECTIN
OS493_008591-T1
OS493_008595-T1
OS493_008596-T1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
OS493_008597-T1
OS493_008598-T1
OS493_008599-T1UNCHARACTERIZED
OS493_008600-T1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
OS493_008601-T1E3 UBIQUITIN-PROTEIN LIGASE TOPORS
OS493_008602-T1UNCHARACTERIZED
OS493_008603-T1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
OS493_008604-T1MYOSIN LIGHT CHAIN 1, 3
OS493_008605-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_008606-T1POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
OS493_008607-T1POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
OS493_008608-T1
OS493_008609-T1
OS493_008610-T1
OS493_008611-T1RADIAL SPOKE HEAD 1 HOMOLOG
OS493_008613-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 17
OS493_008614-T1-
OS493_008616-T1
OS493_008617-T1EH DOMAIN
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