Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_008731-T1 | |
OS493_008732-T1 | SH2 CONTAINING ADAPTOR PRAM-1 RELATED |
OS493_008733-T1 | |
OS493_008734-T1 | |
OS493_008735-T1 | URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10 |
OS493_008737-T1 | LIPID PHOSPHATE PHOSPHATASE |
OS493_008738-T1 | LIPID PHOSPHATE PHOSPHATASE |
OS493_008739-T1 | LIPID PHOSPHATE PHOSPHATASE |
OS493_008740-T1 | HISTONE H1 |
OS493_008741-T1 | PROTEIN EVA-1 |
OS493_008742-T1 | LIPID PHOSPHATE PHOSPHATASE |
OS493_008743-T1 | |
OS493_008744-T1 | EH DOMAIN |
OS493_008745-T1 | |
OS493_008746-T1 | R3H DOMAIN-CONTAINING PROTEIN 4 |
OS493_008747-T1 | RB1-INDUCIBLE COILED-COIL |
OS493_008748-T1 | S-ADENOSYLMETHIONINE SYNTHETASE |
OS493_008749-T1 | SODIUM LEAK CHANNEL NON-SELECTIVE PROTEIN |
OS493_008750-T1 | SODIUM LEAK CHANNEL NON-SELECTIVE PROTEIN |
OS493_008751-T1 | SODIUM LEAK CHANNEL NON-SELECTIVE PROTEIN |
OS493_008752-T1 | |
OS493_008753-T1 | CYTOCHROME C1 HEME LYASE |
OS493_008754-T1 | |
OS493_008756-T1 | UNCHARACTERIZED |
OS493_008757-T1 | UNCHARACTERIZED |
OS493_008758-T1 | UNCHARACTERIZED |
OS493_008759-T1 | F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED |
OS493_008760-T1 | SR-RELATED CTD ASSOCIATED FACTOR 6 |
OS493_008761-T1 | GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL |
OS493_008762-T1 | GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL |
OS493_008763-T1 | |
OS493_008764-T1 | SERINE/THREONINE-PROTEIN KINASE |
OS493_008765-T1 | HISTONE H1 |
OS493_008766-T1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
OS493_008767-T1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
OS493_008768-T1 | ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED |
OS493_008770-T1 | |
OS493_008772-T1 | |
OS493_008773-T1 | ISOMERASE |
OS493_008774-T1 | UNCHARACTERIZED |
OS493_008775-T1 | |
OS493_008776-T1 | |
OS493_008777-T1 | |
OS493_008778-T1 | |
OS493_008779-T1 | UNCHARACTERIZED |
OS493_008780-T1 | UNCHARACTERIZED |
OS493_008781-T1 | ARGININE OR CREATINE KINASE |
OS493_008782-T1 | ARGININE OR CREATINE KINASE |
OS493_008783-T1 | DISCS LARGE |
OS493_008784-T1 |