Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_008842-T1 | BLR2807 PROTEIN |
OS493_008843-T1 | CAMK FAMILY PROTEIN KINASE |
OS493_008844-T1 | SI:DKEY-276J7.1 |
OS493_008845-T1 | |
OS493_008846-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_008847-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_008848-T1 | TETRA THYMOSIN |
OS493_008849-T1 | THYMOSIN BETA |
OS493_008850-T1 | PROTEIN ABHD18 |
OS493_008851-T1 | STERILE20-LIKE KINASE, ISOFORM B-RELATED |
OS493_008853-T1 | |
OS493_008854-T1 | |
OS493_008855-T1 | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN |
OS493_008856-T1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
OS493_008857-T1 | |
OS493_008858-T1 | |
OS493_008859-T1 | ANION EXCHANGE PROTEIN |
OS493_008860-T1 | ANION EXCHANGE PROTEIN |
OS493_008861-T1 | KINETOCHORE SCAFFOLD 1 |
OS493_008862-T1 | |
OS493_008863-T1 | |
OS493_008864-T1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
OS493_008865-T1 | |
OS493_008866-T1 | |
OS493_008867-T1 | |
OS493_008868-T1 | |
OS493_008869-T1 | |
OS493_008870-T1 | |
OS493_008871-T1 | |
OS493_008872-T1 | MODULATOR OF FTSH PROTEASE HFLC |
OS493_008873-T1 | |
OS493_008874-T1 | |
OS493_008875-T1 | |
OS493_008876-T1 | |
OS493_008877-T1 | FORKHEAD BOX PROTEIN N3-LIKE PROTEIN-RELATED |
OS493_008878-T1 | UNCHARACTERIZED |
OS493_008879-T1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
OS493_008880-T1 | |
OS493_008881-T1 | ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 |
OS493_008883-T1 | |
OS493_008884-T1 | PEPTIDE N-GLYCANASE PNGASE -RELATED |
OS493_008885-T1 | PEPTIDE N-GLYCANASE PNGASE -RELATED |
OS493_008886-T1 | THIOREDOXIN-LIKE PROTEIN 1 |
OS493_008887-T1 | |
OS493_008888-T1 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
OS493_008889-T1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
OS493_008890-T1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
OS493_008891-T1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
OS493_008892-T1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
OS493_008893-T1 |