About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_008507-T1
OS493_008509-T1
OS493_008510-T1ANKYRIN REPEAT PROTEIN
OS493_008511-T1KELCH REPEAT DOMAIN
OS493_008512-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10
OS493_008513-T1ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED
OS493_008514-T1
OS493_008515-T1PATCHED-RELATED
OS493_008516-T1PATCHED-RELATED
OS493_008517-T1CENTLEIN
OS493_008518-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_008519-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_008520-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_008521-T1INTESTINAL TREFOIL FACTOR-RELATED
OS493_008522-T1
OS493_008523-T1WD40 REPEAT PROTEIN 12, 37
OS493_008524-T1
OS493_008525-T1
OS493_008526-T1
OS493_008527-T1
OS493_008528-T1FUKUTIN-RELATED
OS493_008529-T1
OS493_008530-T1MENORIN (DENDRITIC BRANCHING PROTEIN)
OS493_008531-T1MENORIN (DENDRITIC BRANCHING PROTEIN)
OS493_008532-T1PROTEIN SIDEKICK
OS493_008533-T1SIDESTEP PROTEIN
OS493_008534-T1SUSHI DOMAIN-CONTAINING PROTEIN 1
OS493_008535-T1CONTACTIN 5
OS493_008536-T1PROTEIN SIDEKICK
OS493_008537-T1
OS493_008538-T1CONTACTIN 5
OS493_008539-T1CONTACTIN 5
OS493_008540-T1
OS493_008541-T1
OS493_008542-T1SUSHI DOMAIN-CONTAINING PROTEIN 1
OS493_008543-T1PROTEIN SIDEKICK
OS493_008544-T1PROTEIN SIDEKICK
OS493_008545-T1
OS493_008546-T1
OS493_008547-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_008548-T1SUSHI DOMAIN-CONTAINING PROTEIN 1
OS493_008549-T1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
OS493_008550-T1
OS493_008552-T1PROTEIN SIDEKICK
OS493_008553-T1BASIGIN RELATED
OS493_008557-T1RNA 3' TERMINAL PHOSPHATE CYCLASE
OS493_008558-T1
OS493_008559-T1
OS493_008560-T1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
OS493_008561-T1FORKHEAD BOX PROTEIN
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