About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_008247-T1
OS493_008249-T1
OS493_008250-T1PENICILLIN-BINDING PROTEIN
OS493_008251-T1
OS493_008252-T1
OS493_008253-T1
OS493_008254-T1
OS493_008255-T1
OS493_008256-T1
OS493_008257-T1TRNA THREONYLCARBAMOYLADENOSINE DEHYDRATASE
OS493_008258-T1
OS493_008259-T1
OS493_008260-T1
OS493_008261-T1
OS493_008262-T1
OS493_008263-T1CAVEOLIN
OS493_008264-T1
OS493_008265-T1MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2
OS493_008266-T1
OS493_008267-T1
OS493_008268-T1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
OS493_008269-T1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
OS493_008270-T1LEUCOKININ RECEPTOR-RELATED
OS493_008271-T1
OS493_008272-T1
OS493_008273-T1G-PROTEIN COUPLED RECEPTOR
OS493_008274-T1
OS493_008275-T1
OS493_008276-T1
OS493_008277-T1
OS493_008278-T1
OS493_008306-T1
OS493_008315-T1OVOCHYMASE-RELATED
OS493_008316-T1CD59 GLYCOPROTEIN
OS493_008320-T1
OS493_008321-T1
OS493_008322-T1
OS493_008325-T1CD59 GLYCOPROTEIN
OS493_008326-T1OVOCHYMASE-RELATED
OS493_008327-T1
OS493_008336-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_008337-T1PLAT DOMAIN-CONTAINING PROTEIN
OS493_008338-T1INTELECTIN
OS493_008339-T1
OS493_008340-T1CALPAIN
OS493_008341-T1
OS493_008342-T1AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE
OS493_008343-T1
OS493_008344-T1SIALIDASE
OS493_008345-T1
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