About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_008079-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
OS493_008080-T1PHOSPHOLIPASE A2 FAMILY MEMBER
OS493_008081-T1PHOSPHOLIPASE A2 FAMILY MEMBER
OS493_008082-T1PHOSPHOLIPASE A2 FAMILY MEMBER
OS493_008083-T1CUE DOMAIN CONTAINING 2
OS493_008084-T1CUE DOMAIN CONTAINING 2
OS493_008085-T1
OS493_008086-T1COLLAGEN ALPHA
OS493_008087-T1
OS493_008088-T1
OS493_008089-T1
OS493_008090-T1TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED
OS493_008091-T1FRUCTOSE-2,6-BISPHOSPHATASE TIGAR
OS493_008092-T1
OS493_008093-T1
OS493_008094-T1
OS493_008095-T1BONUS, ISOFORM C-RELATED
OS493_008096-T1BCL-2-LIKE PROTEIN 13
OS493_008097-T1
OS493_008098-T1
OS493_008099-T1MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED
OS493_008100-T1ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED
OS493_008101-T1
OS493_008102-T1LEUCOKININ RECEPTOR-RELATED
OS493_008103-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_008106-T1PA14 DOMAIN-CONTAINING PROTEIN
OS493_008113-T1SPHINGOMYELIN SYNTHETASE
OS493_008114-T1CDC37-RELATED
OS493_008115-T1CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
OS493_008116-T1
OS493_008117-T1
OS493_008118-T1
OS493_008119-T1
OS493_008120-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_008121-T1
OS493_008122-T1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON
OS493_008123-T1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON
OS493_008124-T1
OS493_008125-T1
OS493_008126-T1TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1
OS493_008127-T1PHOSPHOLIPASE A2 FAMILY MEMBER
OS493_008128-T1PHOSPHOLIPASE A2 FAMILY MEMBER
OS493_008129-T1
OS493_008130-T1
OS493_008131-T1
OS493_008132-T1
OS493_008133-T1
OS493_008134-T1
OS493_008135-T1
OS493_008136-T1EGF-LIKE-DOMAIN, MULTIPLE 7, 8
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