Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_008079-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
OS493_008080-T1 | PHOSPHOLIPASE A2 FAMILY MEMBER |
OS493_008081-T1 | PHOSPHOLIPASE A2 FAMILY MEMBER |
OS493_008082-T1 | PHOSPHOLIPASE A2 FAMILY MEMBER |
OS493_008083-T1 | CUE DOMAIN CONTAINING 2 |
OS493_008084-T1 | CUE DOMAIN CONTAINING 2 |
OS493_008085-T1 | |
OS493_008086-T1 | COLLAGEN ALPHA |
OS493_008087-T1 | |
OS493_008088-T1 | |
OS493_008089-T1 | |
OS493_008090-T1 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
OS493_008091-T1 | FRUCTOSE-2,6-BISPHOSPHATASE TIGAR |
OS493_008092-T1 | |
OS493_008093-T1 | |
OS493_008094-T1 | |
OS493_008095-T1 | BONUS, ISOFORM C-RELATED |
OS493_008096-T1 | BCL-2-LIKE PROTEIN 13 |
OS493_008097-T1 | |
OS493_008098-T1 | |
OS493_008099-T1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED |
OS493_008100-T1 | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED |
OS493_008101-T1 | |
OS493_008102-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_008103-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_008106-T1 | PA14 DOMAIN-CONTAINING PROTEIN |
OS493_008113-T1 | SPHINGOMYELIN SYNTHETASE |
OS493_008114-T1 | CDC37-RELATED |
OS493_008115-T1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
OS493_008116-T1 | |
OS493_008117-T1 | |
OS493_008118-T1 | |
OS493_008119-T1 | |
OS493_008120-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_008121-T1 | |
OS493_008122-T1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON |
OS493_008123-T1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON |
OS493_008124-T1 | |
OS493_008125-T1 | |
OS493_008126-T1 | TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 |
OS493_008127-T1 | PHOSPHOLIPASE A2 FAMILY MEMBER |
OS493_008128-T1 | PHOSPHOLIPASE A2 FAMILY MEMBER |
OS493_008129-T1 | |
OS493_008130-T1 | |
OS493_008131-T1 | |
OS493_008132-T1 | |
OS493_008133-T1 | |
OS493_008134-T1 | |
OS493_008135-T1 | |
OS493_008136-T1 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |