About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_007769-T1ENOYL-COA HYDRATASE-RELATED
OS493_007770-T1TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT MAPKAP1
OS493_007771-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_007772-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_007773-T1LEUCOKININ RECEPTOR-RELATED
OS493_007774-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_007775-T1
OS493_007776-T1
OS493_007777-T1
OS493_007778-T1FORKHEAD BOX PROTEIN
OS493_007779-T1
OS493_007780-T1
OS493_007781-T1FORKHEAD BOX PROTEIN
OS493_007782-T1O-ACYLTRANSFERASE
OS493_007783-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_007784-T1CD59 GLYCOPROTEIN
OS493_007785-T1TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE
OS493_007786-T1MULTICOPPER OXIDASE-RELATED
OS493_007787-T1
OS493_007788-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_007789-T1DNA REPAIR/RNA PROCESSING CPSF FAMILY
OS493_007790-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_007791-T1DNA REPAIR/RNA PROCESSING CPSF FAMILY
OS493_007792-T1DNA REPAIR/RNA PROCESSING CPSF FAMILY
OS493_007793-T1GLYCINE CLEAVAGE SYSTEM H PROTEIN
OS493_007794-T1
OS493_007795-T1
OS493_007796-T1
OS493_007797-T1
OS493_007798-T1
OS493_007799-T1
OS493_007800-T1
OS493_007801-T1
OS493_007802-T1
OS493_007803-T1
OS493_007804-T1RIKEN CDNA 4921504E06 GENE
OS493_007805-T1
OS493_007806-T1RIKEN CDNA 4921504E06 GENE
OS493_007807-T1RIKEN CDNA 4921504E06 GENE
OS493_007808-T1RIKEN CDNA 4921504E06 GENE
OS493_007809-T1
OS493_007810-T1RIKEN CDNA 4921504E06 GENE
OS493_007811-T1
OS493_007812-T1RIKEN CDNA 4921504E06 GENE
OS493_007813-T1BATTENIN
OS493_007814-T1
OS493_007816-T1
OS493_007817-T1
OS493_007819-T1RIKEN CDNA 4921504E06 GENE
OS493_007820-T1IP14615P
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