About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_007603-T1
OS493_007604-T1ZINC FINGER, RING/FYVE/PHD-TYPE
OS493_007605-T1EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN
OS493_007606-T1TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE
OS493_007607-T1TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE
OS493_007609-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
OS493_007610-T1SH3 MULTIPLE DOMAIN
OS493_007611-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_007612-T1TONSOKU-LIKE PROTEIN
OS493_007613-T1PROTEASOME ASSEMBLY CHAPERONE 4
OS493_007615-T1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
OS493_007616-T1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
OS493_007617-T1UNCHARACTERIZED
OS493_007618-T1
OS493_007620-T1
OS493_007621-T1
OS493_007622-T1
OS493_007623-T1
OS493_007624-T1
OS493_007625-T1
OS493_007626-T1DRAB5-RELATED
OS493_007627-T1DRAB5-RELATED
OS493_007628-T1DRAB5-RELATED
OS493_007629-T1
OS493_007630-T1DRAB5-RELATED
OS493_007631-T1MTG8 ETO EIGHT TWENTY ONE PROTEIN
OS493_007632-T1
OS493_007633-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
OS493_007634-T1MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1
OS493_007635-T1
OS493_007636-T1DRAB5-RELATED
OS493_007637-T1CAPPUCCINO
OS493_007638-T1SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N
OS493_007639-T1
OS493_007640-T1
OS493_007642-T1
OS493_007643-T1
OS493_007644-T1
OS493_007645-T1
OS493_007646-T1
OS493_007647-T1
OS493_007648-T1
OS493_007650-T1
OS493_007652-T1
OS493_007653-T1
OS493_007654-T1
OS493_007655-T1REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1
OS493_007656-T1CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2
OS493_007657-T1CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2
OS493_007658-T1
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