About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002897-T1MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED
OS493_002898-T1-
OS493_002899-T1RP42 RELATED
OS493_002900-T1PROTEIN PHOSPHATASE 2C
OS493_002901-T1MYOSIN HEAVY CHAIN, NON-MUSCLE
OS493_002902-T1CINGULIN-LIKE PROTEIN 1-RELATED
OS493_002903-T1RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
OS493_002904-T1B9 DOMAIN-CONTAINING
OS493_002905-T1IFT140/172-RELATED
OS493_002906-T1BRCA1-ASSOCIATED ATM ACTIVATOR 1
OS493_002907-T1AGAP008170-PA
OS493_002908-T1VILLIN
OS493_002909-T1PROTEIN ENHANCER OF SEVENLESS 2B
OS493_002910-T1NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED
OS493_002912-T1NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED
OS493_002913-T1NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED
OS493_002914-T1NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED
OS493_002915-T1POLYCOMB GROUP PROTEIN
OS493_002916-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_002917-T1PROTEIN ENHANCER OF SEVENLESS 2B
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